Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10o09
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    28   1.5  
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    26   4.6  

>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 505 LLTGILFQNFGLVTMTDEYRKLNQDLRKLALVIILTR-AGLGLDAKVLKKHYAAV 666
           LL GIL   FG++ + +  R L    R    + ILTR AGL  D  +++K Y A+
Sbjct: 188 LLWGILMF-FGMLFLPESPRYLAVKGRNEECMKILTRNAGLPADHPIMQKEYNAI 241


>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -1

Query: 683 NKPSCNTAA*C-FFNTLASNPRPALVRIITSASFLRS*FNFLYSSVIVTSPKFWKSIPVS 507
           NK   N+A     +    S P P L+       F    ++ L++ ++ T  K W  +  +
Sbjct: 173 NKSKANSAGLINLYEITKSYPTPELL-FTDGLHFSSLGYSLLFNEIVATISKAWPELLPN 231

Query: 506 NMPIR 492
           N+P++
Sbjct: 232 NLPLQ 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,837
Number of Sequences: 5004
Number of extensions: 47923
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)