Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10o09
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 31 1.2
04_03_0878 + 20505116-20505182,20505270-20505354,20505463-205056... 29 2.8
02_04_0460 - 23118221-23118406,23118417-23118671,23118763-231188... 29 2.8
08_02_0311 - 15635165-15635590,15635777-15638698 29 3.6
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 29 3.6
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 29 3.6
06_01_0295 - 2154069-2155483,2155561-2155708 28 6.4
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 28 8.4
>05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +1
Query: 499 GMLLTGILFQNFGLVTMTDEYRKLNQ--DLRKLALVIILTRAGLG 627
G+LL L ++ ++TMTD YR L+Q D+ +L L++ L + G
Sbjct: 919 GLLLAFGLHEHLRVLTMTDAYRYLSQEHDITRLGLLLGLAASNRG 963
>04_03_0878 +
20505116-20505182,20505270-20505354,20505463-20505642,
20505759-20505855
Length = 142
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 418 LGMSLLVIAAYLIGWIWLKVTTLPALIGMLLTGILFQNFG 537
L L VI LIGWI +++PA+ G LTG+ F + G
Sbjct: 57 LRRDLNVIGFGLIGWI--APSSVPAINGNSLTGLFFSSIG 94
>02_04_0460 -
23118221-23118406,23118417-23118671,23118763-23118851,
23119527-23119605,23121317-23121484,23121760-23122137
Length = 384
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 220 SATIYHSIFHLCVRRCHLVPLNLPFF-LYSNY 128
S TI H+ +R+CHL +LP + +YSNY
Sbjct: 298 SPTILHTTMLAMIRKCHLQLSSLPCWNVYSNY 329
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 256 PSWKP-KWWTRFFPFP--LFSTYRQSALKICFILFFLLTWGILYAELGEAIGLHGELLGM 426
P KP K TR P P + S YR + F+L F LTW I + EA+ L GM
Sbjct: 274 PEQKPFKPLTRKIPMPTSVISPYRIFIVIRMFVLLFYLTWRIRNPNM-EALW----LWGM 328
Query: 427 SLLVIAAYLIGWI 465
S++ + W+
Sbjct: 329 SIVCELWFAFSWL 341
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 256 PSWKPKWWTRFFPFPLFSTYRQSALKICFILFFLLTWGILYAELGEA 396
PSW+P+W F +S AL +C ++ FL++W L A
Sbjct: 474 PSWRPRW-----KFHHWSLSLVGAL-LCVVIMFLISWSFTVVSLALA 514
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 295 FPLFSTYRQSALKICFILFFLLTWGILYAELGEAIGLHGELLGMSLLVIAA 447
+P + Q+ + + LL W + Y ELG G+H ELL L V+ A
Sbjct: 105 YPELGNFFQTTICQSMLGRILLVWSLRYPELGYKQGMH-ELLAPLLYVLHA 154
>06_01_0295 - 2154069-2155483,2155561-2155708
Length = 520
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 355 LLTWGILYAELGEAIGLHGELLGMSLLVIAAYLIGWIW 468
+L GI+ A+LG+ G+ +L+IAAY+ G+ W
Sbjct: 372 VLIGGIMAAKLGDDGGVSRAWAAALILLIAAYVAGFGW 409
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +1
Query: 256 PSWKPKWWTRFFPFPLFSTYRQSALKICFILFFLLTWGILYAELGEA 396
PSW+P+W + L +C ++ F+++W L A
Sbjct: 466 PSWRPRWKLHHWSLSLIGAL------LCIVIMFMISWTFTVVSLALA 506
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,700,032
Number of Sequences: 37544
Number of extensions: 282320
Number of successful extensions: 686
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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