Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10o09
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z68106-1|CAA92124.1| 516|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z83111-4|CAB05535.2| 498|Caenorhabditis elegans Hypothetical pr... 36 0.022
U61953-2|AAC48081.1| 356|Caenorhabditis elegans Seven tm recept... 28 5.7
Z95622-1|CAB09132.2| 480|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z68131-3|CAA92219.2| 480|Caenorhabditis elegans Hypothetical pr... 28 7.6
AF497823-1|AAM18101.1| 479|Caenorhabditis elegans putative Na-H... 28 7.6
>Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 48.4 bits (110), Expect = 5e-06
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Frame = +1
Query: 403 LHGELLGMSLLVIAAYLIGWIWLKVTTLPALIGMLLTGILFQN---FGLVTMTDEYRKLN 573
LH ++ ++V+ A G + +K P+LIG +L GI +N FG + +EY +
Sbjct: 69 LHS-IISCFMMVVLAVAAGKL-VKFIYTPSLIGCMLVGIAMRNVPQFGELFYINEYWQFI 126
Query: 574 QDLRKLALVIILTRAGLGLDAKVLKKHYAAVLQLGLLPWLVECIA 708
LRKL+LV+I+ R G+ ++ + +KK+Y LGL E +A
Sbjct: 127 --LRKLSLVVIIIRWGISINVRFIKKNYIFPPILGLGSAFSEALA 169
>Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 48.4 bits (110), Expect = 5e-06
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Frame = +1
Query: 403 LHGELLGMSLLVIAAYLIGWIWLKVTTLPALIGMLLTGILFQN---FGLVTMTDEYRKLN 573
LH ++ ++V+ A G + +K P+LIG +L GI +N FG + +EY +
Sbjct: 69 LHS-IISCFMMVVLAVAAGKL-VKFIYTPSLIGCMLVGIAMRNVPQFGELFYINEYWQFI 126
Query: 574 QDLRKLALVIILTRAGLGLDAKVLKKHYAAVLQLGLLPWLVECIA 708
LRKL+LV+I+ R G+ ++ + +KK+Y LGL E +A
Sbjct: 127 --LRKLSLVVIIIRWGISINVRFIKKNYIFPPILGLGSAFSEALA 169
>Z68106-1|CAA92124.1| 516|Caenorhabditis elegans Hypothetical
protein F41E7.1 protein.
Length = 516
Score = 39.1 bits (87), Expect = 0.003
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Frame = +1
Query: 427 SLLVIAAYLIGWIWL----KVTTLPALIGMLLTGILFQNFGLVTMTDEYRK----LNQDL 582
S+ VI L+ I+ K LP L G L GI+ +N +T+ D++ + +
Sbjct: 67 SIFVIFILLVAGIFAAKISKALRLPPLFGCLALGIIIKN---ITVFDQFFVFPPFVETMI 123
Query: 583 RKLALVIILTRAGLGLDAKVLKKHYAAVLQLGLLPWLVECIA 708
RK+ALV+I+ R GL D L ++ + +GL+ + E IA
Sbjct: 124 RKVALVMIIVRWGLATDIHFLYENALMPVTIGLVTAIGEIIA 165
>Z83111-4|CAB05535.2| 498|Caenorhabditis elegans Hypothetical
protein F57G8.5 protein.
Length = 498
Score = 36.3 bits (80), Expect = 0.022
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 484 LPALIGMLLTGILFQNFGLVTMTDEYRKLNQDL-RKLALVIILTRAGLGLDAKVLKKHYA 660
LP L G L GI+ +N ++ + + RK+AL +I+ R GL D K L ++
Sbjct: 81 LPPLFGCLALGIVIRNVDVLKDFFIIPPFTETMIRKVALAMIVIRWGLATDVKFLYENAV 140
Query: 661 AVLQLGLLPWLVECIA 708
+ +GL+ + E IA
Sbjct: 141 TPVTIGLVTAIGEIIA 156
>U61953-2|AAC48081.1| 356|Caenorhabditis elegans Seven tm receptor
protein 185 protein.
Length = 356
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 196 IYYDKWWQKFC-LRFHQPDSTPSWKPK 273
I+Y WW C L FH DST + K
Sbjct: 143 IFYGTWWSVLCYLYFHFDDSTDDYMRK 169
>Z95622-1|CAB09132.2| 480|Caenorhabditis elegans Hypothetical
protein B0395.1 protein.
Length = 480
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 228 FAFSSTGLDTLLET*VVDAVFPVSFILNVQAISSENLLYL 347
+ F+ T +DTLL + V+ AV PV+ + + I LLY+
Sbjct: 94 YDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYI 133
>Z68131-3|CAA92219.2| 480|Caenorhabditis elegans Hypothetical
protein B0395.1 protein.
Length = 480
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 228 FAFSSTGLDTLLET*VVDAVFPVSFILNVQAISSENLLYL 347
+ F+ T +DTLL + V+ AV PV+ + + I LLY+
Sbjct: 94 YDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYI 133
>AF497823-1|AAM18101.1| 479|Caenorhabditis elegans putative Na-H
exchanger isoform 1 protein.
Length = 479
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 228 FAFSSTGLDTLLET*VVDAVFPVSFILNVQAISSENLLYL 347
+ F+ T +DTLL + V+ AV PV+ + + I LLY+
Sbjct: 93 YDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYI 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,044,662
Number of Sequences: 27780
Number of extensions: 259008
Number of successful extensions: 637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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