Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10o08
         (718 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    25   0.81 
AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4 p...    22   4.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.6  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   7.6  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 19/82 (23%), Positives = 34/82 (41%)
 Frame = -1

Query: 493 ILMPKFSSTDNDRPQHFYPYKTLLVSSLGRNNLLYAYGNFFLIPSIKLDTTLSHQKMFHH 314
           I +PK +ST+N+ P+ +               + Y  G    I  + + +  +    F  
Sbjct: 25  ICVPKITSTNNEVPRWY---------------ICYTIGVIITIGCLCIWSIFNKWNQFRS 69

Query: 313 LKNLSVVLFPVVTYIAHTHSHI 248
             N SV LF ++T +  T + I
Sbjct: 70  YSNFSVFLFDIITIVTLTSTSI 91


>AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4
           protein.
          Length = 23

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 60  WRSNRGARSRPSTST 104
           W  NRG   RP TS+
Sbjct: 2   WHRNRGDGGRPETSS 16


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 472 STDNDRPQHFYPYKTLLVSSLGRNN 398
           S+  + P+H+Y  KTL  ++   +N
Sbjct: 101 SSTPESPEHYYNQKTLQANNNDASN 125


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 521 NMMLGCNSCDIRCQY 565
           N ML CN+   RC Y
Sbjct: 151 NFMLHCNNTTWRCLY 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,578
Number of Sequences: 336
Number of extensions: 3506
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)