Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10o08
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0126 + 12835431-12838183,12838471-12838566,12838920-128389...    28   6.4  
07_03_1315 - 25722757-25722876,25722972-25723328,25723924-257245...    28   6.4  
03_02_0850 + 11775232-11776077,11776761-11777321                       28   8.5  

>08_02_0126 +
           12835431-12838183,12838471-12838566,12838920-12838971,
           12839198-12839298,12839349-12839370
          Length = 1007

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/41 (29%), Positives = 28/41 (68%)
 Frame = +1

Query: 124 HQLSRKGDEKTTRQNLNLLSRGLITNGKVTEKFELVKKVLI 246
           +Q++++G E  T     L++ GL  +G+V E F+L++++++
Sbjct: 274 NQMAKEGCEPNTVTYSTLIN-GLCDSGRVNEAFDLIREMIL 313


>07_03_1315 -
           25722757-25722876,25722972-25723328,25723924-25724500,
           25724577-25725265,25725487-25725822,25726190-25726527,
           25726619-25726746,25726906-25727030,25727547-25727589,
           25727714-25727802,25728396-25728511,25729157-25729276,
           25729752-25729794
          Length = 1026

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 75  RGWSARHVAAGSGDARTVG 19
           RGW+A H AA  G  RTVG
Sbjct: 663 RGWTALHWAASCGRERTVG 681


>03_02_0850 + 11775232-11776077,11776761-11777321
          Length = 468

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 662 LNHINQYTMQEIT*HWCNL-QVERHFMFSFSPQNID 558
           +N IN  + ++ T  W  L +VERHF + +  QN D
Sbjct: 384 MNLINGISREDWTRMWNRLKEVERHFEYQYPSQNDD 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,238,848
Number of Sequences: 37544
Number of extensions: 336691
Number of successful extensions: 902
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)