Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10o08
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm recept...    30   1.4  
AF022972-12|AAC48232.1|  363|Caenorhabditis elegans Seven tm rec...    28   5.8  
Z54284-2|CAA91060.2|  157|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm receptor
           protein 1 protein.
          Length = 345

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 405 EIIYCMLTGISFSFLPLNWIQHYHTKKCSTILKTFQ 298
           ++++C + G S +   +N+I  Y   K S +LK+F+
Sbjct: 93  DLLFCGMLGCSMAIFTINFIYRYLVMKGSELLKSFE 128


>AF022972-12|AAC48232.1|  363|Caenorhabditis elegans Seven tm
           receptor protein 204 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 396 YCMLTGISFSFLPLNWIQHYHTKKCSTILKTFQ 298
           YC   G S +   ++++  Y   K S +LKTFQ
Sbjct: 97  YCGFYGCSMAIFGIHFVYRYLVAKGSDLLKTFQ 129


>Z54284-2|CAA91060.2|  157|Caenorhabditis elegans Hypothetical
           protein D2085.2 protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 695 EKLYENTFHWALNHINQYTMQ 633
           +K+ EN FHW L  I +Y  +
Sbjct: 16  DKMNENNFHWQLKEIGKYARE 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,410,696
Number of Sequences: 27780
Number of extensions: 317374
Number of successful extensions: 768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)