Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10o07
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    30   0.13 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   2.2  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   2.2  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    26   2.9  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   3.8  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   3.8  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   5.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.6  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   6.6  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   6.6  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    24   8.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   8.7  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    24   8.7  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +3

Query: 126  NADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPYFKPTPFP 290
            N    N Y PI      VNP   Y P+G        G+  V PP++P  +  P P
Sbjct: 977  NMPPSNPYTPIAVASSTVNPAHTYKPHG--------GSQIVPPPKQPANRVVPLP 1023


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 132 DSGNGYEPIDNRPYIVNPPKD-YNPNGNGYEPIDNGAYYVDPPRRP 266
           DSGN +      P  V PP + YNP     +P  +  Y   PP +P
Sbjct: 577 DSGNDWH---GNPSTVPPPTNPYNPGYPYMDPNYSSGYVSQPPWQP 619


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +3

Query: 126  NADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 269
            NAD G  Y  +DN   I   P        G   I N   ++DPP +PY
Sbjct: 1025 NADQGWVYGDLDNDTIIDRVPP-------GSSRISNFIRFLDPPPKPY 1065


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 239 ILRGPSPPTLLQAYPFPWCSRWEVKNIL 322
           +L G   P L   Y + WC+  E+KN L
Sbjct: 225 LLNGLDVPNLQNVYDWVWCTYDELKNKL 252


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
 Frame = +3

Query: 192 DYNPNG-NGYEPIDNGAYYVDP----PRRPYFKPTPFPG 293
           DYN N  N Y PI N  Y+++        PYF     PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 85  WLWPTLKTQLR*WKTLTQETATN 153
           W WPT  + LR    +T ET T+
Sbjct: 375 WFWPTFASFLRESDVVTTETGTS 397


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 427 FFFKHYNMFIYLFR*HKFI*NFEI 356
           FF K Y+ F+++FR + FI +FE+
Sbjct: 188 FFLKQYHNFMFVFRDY-FIRDFEL 210


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 127 TLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPADLTSSLPLSL 291
           T T  T TN      TS      T++  T  + S +  IT T+P   TSS  + +
Sbjct: 153 TSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPI 207


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 69  FVLALLAMANAQDPVKVVENADSGNGYEP 155
           F+  +L++A  + P  V  + D+G GY P
Sbjct: 223 FLFPILSLAFDKGPAAVPVDQDAGMGYRP 251


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 424 FFKHYNMFIYLFR*HKFI*NFEIYC*YIISLL 329
           FF  YN FI+ F+   FI ++     Y+I +L
Sbjct: 470 FFNGYNAFIHGFKYRSFITSYIGIAAYVIMIL 501


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 156 IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 242
           +++ PY+ N   D+N NGN   P+   +Y
Sbjct: 370 VNSMPYLSNG--DHNNNGNTSSPVSRFSY 396


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -1

Query: 326  FLRYSLLPTASTRERGRLEVRSAGRVHVICTVVDRFVAVSIRVVIFGRINDVRAVVNRF 150
            F R+S L   S    GR+      +  ++    D FV +S  ++IFG+ +++   V  F
Sbjct: 1679 FYRHSQLK--SMLRNGRMSDHDQIQPFLLSNTFDDFVKISSLMLIFGKQDNILYYVKLF 1735


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 120 VENADSGNGYEPIDNRPYIVNPPKDYNPNGNGY 218
           + +  + NGY+P+     I   P  Y P  +G+
Sbjct: 413 IHDCSTNNGYQPLRKNQVITIEPGLYVPEEDGW 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,699,884
Number of Sequences: 5004
Number of extensions: 35276
Number of successful extensions: 99
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)