Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10o07
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.83 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   0.83 
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   4.4  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   4.4  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   4.4  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   4.4  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   4.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 178 LILPKITTLMETATNLSTTVHI-TWTLP 258
           L+LPK+T  +E    L+ TV I TW  P
Sbjct: 518 LVLPKLTLEVEEWNPLTDTVPIHTWIHP 545


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 16/69 (23%), Positives = 26/69 (37%)
 Frame = +3

Query: 102 QDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPYFKPT 281
           Q P  + EN D    Y+   N   +     DY+   +   P     +  D  +  Y  P+
Sbjct: 85  QSPYLMYENPDEEKRYQEHPNGKILRELQTDYDRRLHDNSPSFLSDHSRDQEQNLYLTPS 144

Query: 282 PFPGARGGK 308
           P   + GG+
Sbjct: 145 PQMYSSGGE 153


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 225 IDNGAYYVDPPRRPYFKPT 281
           I   AY   PP  P F+PT
Sbjct: 157 IPPNAYRFRPPLNPRFEPT 175


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 225 IDNGAYYVDPPRRPYFKPT 281
           I   AY   PP  P F+PT
Sbjct: 160 IPPNAYRFRPPLNPRFEPT 178


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 225 IDNGAYYVDPPRRPYFKPT 281
           I   AY   PP  P F+PT
Sbjct: 160 IPPNAYRFRPPLNPRFEPT 178


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 225 IDNGAYYVDPPRRPYFKPT 281
           I   AY   PP  P F+PT
Sbjct: 160 IPPNAYRFRPPLNPRFEPT 178


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 225 IDNGAYYVDPPRRPYFKPT 281
           I   AY   PP  P F+PT
Sbjct: 160 IPPNAYRFRPPLNPRFEPT 178


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 75  LALLAMANAQDPVKVVENADSGNGYEPIDNRPY 173
           L L  M     P+ +V+N +S      I N P+
Sbjct: 297 LTLAKMEKTSKPLPMVDNPESTGNLVYIYNNPF 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,463
Number of Sequences: 438
Number of extensions: 2895
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)