Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10o04
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 29 0.45
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.8
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 2.4
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 27 3.1
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 3.1
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 26 4.2
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb... 26 5.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.3
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 9.6
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 9.6
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 9.6
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 25 9.6
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 29.5 bits (63), Expect = 0.45
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 525 TE*PKQQ-SSSPTKRPTTKRHHAQPSGTHAE 614
TE PK Q SSSPTK TT++ +P E
Sbjct: 439 TEAPKSQFSSSPTKESTTRKSEVEPPSPSKE 469
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 157 PSLLRFRTTLSHSLNKS--TTHQHQSVNRSXXXXXLSTFTSEGTSV 26
PSL R +T S S + S T+H Q S ST +S GTSV
Sbjct: 46 PSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSV 91
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 253 IQPNGDWMTIAARSPDKEPSPPKQINFAEPLVESVRV 363
+QP M A +P P+PP ++ P V +V V
Sbjct: 1458 VQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPV 1494
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 584 VPFCGWSFCWRGGLLFRSFRLKRASKLIPLISSRAV 477
+PF G+SFC++ L F K +L+ L A+
Sbjct: 116 IPFYGYSFCFQKFLKICLFSPKNRDRLVDLFRQGAI 151
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 325 INFAEPLVESVRVYLANEVPSKQLAL 402
I F PL+ ++ Y A E P+K+L L
Sbjct: 23 IYFVTPLIHGMKQYSAGEAPAKRLFL 48
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -1
Query: 205 NDCGSGGVRISASGTAPSLLRFRTTLSHSLNKSTTHQHQSVN 80
++ G G A L++ +T++HS TH HQ N
Sbjct: 826 DEIGRGTTASDGIAIAYGCLKYLSTINHSRTLFATHAHQLTN 867
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 545 LLFRSFRLKRASKLIPLISSRAV*EAMSTSQ 453
LLFR+ RL R +PL+ R V E + +
Sbjct: 6 LLFRNLRLARPRPFLPLVGKRFVTEKSQSQE 36
>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +1
Query: 262 NGDWMTIAARSPDKEPSPPKQINFAEPLVESVRVYLANEVPSKQLA 399
NG ++ SP+ +PS P ++N + + V +Y +E+ ++++
Sbjct: 76 NGTFVNETRLSPENKPSAPCKLNSGDIVDFGVDIYNEDEIVHQKVS 121
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 7.3
Identities = 25/97 (25%), Positives = 42/97 (43%)
Frame = -1
Query: 310 TAPYLGSVLRSSSNHHLVELNLSHSAESSIW*SPGNDCGSGGVRISASGTAPSLLRFRTT 131
T+P S SSS+ + S S+ SS S + S S+S ++ S T+
Sbjct: 153 TSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITS 212
Query: 130 LSHSLNKSTTHQHQSVNRSXXXXXLSTFTSEGTSVTF 20
+ S + S++ S + S S+F + +S TF
Sbjct: 213 STSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTF 249
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 9.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -2
Query: 282 DRHPITIWLN*TFPIQLSPQSGDLPGTTAAPAVCGYPPRGPRHLSCVS 139
DR P++ L +P+Q S Q LP AAPA PP S +S
Sbjct: 163 DRSPLS--LPTPYPVQYSTQPVSLPQPIAAPA----PPSAESSKSTIS 204
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 256 QPNGDWMTIAARSPDKEPSPPKQINFAE 339
QP G TIA + PSPP ++NF +
Sbjct: 280 QPTGA-STIAPQPTGTSPSPPVEMNFPD 306
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.0 bits (52), Expect = 9.6
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -1
Query: 370 RDTHAQTPLAARRS*FVLVATAPYLGSVLRSSSNHHLVELNLSHSAESSIW*SPGNDCGS 191
RDT Q +A ++ + T V+ +S NHH N S +A+SS S G D G+
Sbjct: 290 RDTTYQLIIAIWKNTHPFLTTLANGHGVMDASGNHHSGSSNQSINADSSAG-SEGVDEGT 348
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 596 WLGMVPFCGWSFCWRGGLLFR 534
WLG+ PF +F +G LL+R
Sbjct: 829 WLGLCPFFKKAFLRKGDLLWR 849
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,500
Number of Sequences: 5004
Number of extensions: 43653
Number of successful extensions: 161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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