Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10o04
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509           29   3.3  
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605...    29   4.3  
12_01_0419 - 3316866-3318172,3318249-3318360                           28   5.7  
02_04_0407 + 22645775-22645865,22645998-22646269                       28   7.5  
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19...    27   9.9  
05_01_0106 + 702504-702687,702856-703037,703070-703933                 27   9.9  

>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
          Length = 332

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 202 DCGSGGVRISASGTAPSLLRFRTTLSHS 119
           DCGSGG++ +  G AP       TL  S
Sbjct: 95  DCGSGGIQCNGGGAAPPATLMEFTLDGS 122


>08_02_1340 -
           26256768-26256999,26258105-26258774,26259273-26260555,
           26262403-26263499
          Length = 1093

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 617 CLCMSSAWLGMVPFCGWSFCWRGGLLFRS 531
           CL   S  + + P CGW FC  GGL  R+
Sbjct: 482 CLATGSNLMMVCPECGWCFC-VGGLAHRA 509


>12_01_0419 - 3316866-3318172,3318249-3318360
          Length = 472

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 268 DWMTIAARSPDKEPSPPKQINFAEPLVESVRVYLANEV 381
           DW+ + +   + EP PP+ +    P+     V +  EV
Sbjct: 195 DWINVDSSESEPEPEPPRDVAVETPVAVEEEVAVEEEV 232


>02_04_0407 + 22645775-22645865,22645998-22646269
          Length = 120

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 134 RAETQERWRGPRGGYPHTAGAAVVPGR 214
           + + Q+ WRG  GGYP   G    PGR
Sbjct: 39  KVDVQDYWRGG-GGYPPRGGGYGYPGR 64


>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
            196685-196780,197248-197399,198683-198823,199068-199319,
            199463-199603,199686-200003,200146-200232,201025-202006,
            202091-202179,202968-203072,203155-204306,204844-205359,
            205455-205650,206299-207182
          Length = 1979

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 549  SSPTKRPTTKRHHAQPSGTHAEATALGPH 635
            SS   RP+ +RH AQPS     +++ G H
Sbjct: 1723 SSSASRPSLQRHCAQPSHVDRSSSSGGSH 1751


>05_01_0106 + 702504-702687,702856-703037,703070-703933
          Length = 409

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 105 VDLFRECESVVRKRRRDGAVPEADIRTPPEPQ 200
           V +    ++ V  RRRD   P    RTP  PQ
Sbjct: 377 VQMLESSQAFVYHRRRDAPHPSTSARTPSPPQ 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,400,050
Number of Sequences: 37544
Number of extensions: 357960
Number of successful extensions: 1488
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)