Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10o04
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003142-3|AAB54188.1| 739|Caenorhabditis elegans Him-three par... 30 1.3
AF098505-2|AAC67416.2| 814|Caenorhabditis elegans Hypothetical ... 29 3.8
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina... 28 5.1
U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical p... 28 6.7
AF024493-5|AAB70324.1| 583|Caenorhabditis elegans Hypothetical ... 28 6.7
Z81473-7|CAB60992.2| 661|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z81063-8|CAB61013.2| 661|Caenorhabditis elegans Hypothetical pr... 27 8.9
AF492701-1|AAM49753.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492700-1|AAM49752.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492699-1|AAM49751.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492697-1|AAM49749.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492696-1|AAM49748.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492695-1|AAM49747.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492694-1|AAM49746.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492693-1|AAM49745.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492692-1|AAM49744.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492691-1|AAM49743.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492690-1|AAM49742.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492688-1|AAM49741.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492687-1|AAM49740.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF492686-1|AAM49739.1| 647|Caenorhabditis elegans SPE-9 protein. 27 8.9
AF049327-1|AAC38980.1| 661|Caenorhabditis elegans sperm transme... 27 8.9
>AF003142-3|AAB54188.1| 739|Caenorhabditis elegans Him-three
paralog protein 3 protein.
Length = 739
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 51 VDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEADIRTPPEPQSFPGDHQIED 230
V NY+N + +C +L R S++R R G +P + EP+ PG Q++D
Sbjct: 149 VVNYLNMDDTAQQFCKMFSEL-RNVLSLLRPLPR-GLIPSMKVAYRGEPEFVPGFQQVDD 206
Query: 231 SAEWERFN 254
E+ N
Sbjct: 207 FVNPEQIN 214
>AF098505-2|AAC67416.2| 814|Caenorhabditis elegans Hypothetical
protein Y71H10A.1a protein.
Length = 814
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 341 GSAKLICFGGDGSLSG 294
G +L+C GGDGSL+G
Sbjct: 139 GIGRLVCIGGDGSLTG 154
>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
protein K03H1.2 protein.
Length = 1131
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 141 KRRRDGAVPEADIRTPPEPQSFPGDHQIEDSAEWE 245
++RR PE +R+ E ++ P H E+ A+WE
Sbjct: 189 EKRRRHRKPEDSVRSVKEEKAEPTFHDDEERAQWE 223
>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
determination protein MOG-1 protein.
Length = 1131
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 141 KRRRDGAVPEADIRTPPEPQSFPGDHQIEDSAEWE 245
++RR PE +R+ E ++ P H E+ A+WE
Sbjct: 189 EKRRRHRKPEDSVRSVKEEKAEPTFHDDEERAQWE 223
>U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical
protein F20D6.10 protein.
Length = 486
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 537 KQQSSSPTKRPTTKRHHAQPSGTHAEATAL---GPHHQNR 647
+ Q +S T+RP+ K++ + SG H + A+ HH+ R
Sbjct: 407 ESQKTSVTRRPSLKKNRSVDSGDHYDEVAVFYKEKHHRRR 446
>AF024493-5|AAB70324.1| 583|Caenorhabditis elegans Hypothetical
protein F23F1.6 protein.
Length = 583
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 193 SGGVRISASGTAPSLLRFRTTLSHSLNKSTT 101
+GG+ + G A SLL F L H NKST+
Sbjct: 476 AGGIILLTVGAAFSLLSFVFILGHEQNKSTS 506
>Z81473-7|CAB60992.2| 661|Caenorhabditis elegans Hypothetical
protein C17D12.6 protein.
Length = 661
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 600 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 650
>Z81063-8|CAB61013.2| 661|Caenorhabditis elegans Hypothetical
protein C17D12.6 protein.
Length = 661
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 600 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 650
>AF492701-1|AAM49753.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492700-1|AAM49752.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492699-1|AAM49751.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492697-1|AAM49749.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492696-1|AAM49748.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492695-1|AAM49747.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492694-1|AAM49746.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492693-1|AAM49745.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492692-1|AAM49744.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492691-1|AAM49743.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492690-1|AAM49742.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492688-1|AAM49741.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492687-1|AAM49740.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF492686-1|AAM49739.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 586 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 636
>AF049327-1|AAC38980.1| 661|Caenorhabditis elegans sperm
transmembrane protein protein.
Length = 661
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 21 NVTLVPSDVNVDNYINNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEA 173
NV + S V + + NYE C V L +V RRR G V EA
Sbjct: 600 NVEIAWSSVMTNRLMKNYEFSLPLVACFVSLAILLPVIVISRRRQGRVEEA 650
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,695,053
Number of Sequences: 27780
Number of extensions: 271193
Number of successful extensions: 914
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -