Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10o04
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.28 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.84 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 63  INNYERFTDWC*CVVDLFRECESVVRKRRRDGAVPEADIRTPPEP 197
           ++N  ++ D C    D  + C S     +RDG   E + R PP P
Sbjct: 598 LSNERKYEDVCVLKTDTNQSCPSPPVTTKRDG-TQETEERLPPLP 641


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 561 KRPTTKRHH-AQPSGTHAEATALGPHHQ 641
           K+ T +RHH  Q    H ++TA+  HH+
Sbjct: 134 KQETLQRHHHLQNHHHHLQSTAVQDHHR 161


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -3

Query: 593 LGMVPFCGWSFCW 555
           +G  P C W  CW
Sbjct: 483 IGYYPCCWWKICW 495


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -3

Query: 593 LGMVPFCGWSFCW 555
           +G  P C W  CW
Sbjct: 536 IGYYPCCWWKICW 548


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +3

Query: 462 RHSLSDRSR-RDQGNQLRGALQTE*PKQQSSSPTKRPTTKRHHAQPSGTHAEATALGPHH 638
           R SLS R   R +  +      +    ++S S ++ P+     +QP   H +  +   HH
Sbjct: 8   RKSLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHH 67

Query: 639 QNRRT 653
            N+ T
Sbjct: 68  CNQDT 72


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 128 KCRAETQERWRGPRG 172
           KC+A  +E +RG +G
Sbjct: 564 KCKATNEETYRGGKG 578


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 128 KCRAETQERWRGPRG 172
           KC+A  +E +RG +G
Sbjct: 564 KCKATNEETYRGGKG 578


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 128 KCRAETQERWRGPRG 172
           KC+A  +E +RG +G
Sbjct: 564 KCKATNEETYRGGKG 578


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +3

Query: 573 TKRHH-AQPSGTHAEATAL 626
           T+ HH A PSG HA +  L
Sbjct: 508 TEYHHVAPPSGHHASSAPL 526


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/35 (17%), Positives = 18/35 (51%)
 Frame = +3

Query: 33  VPSDVNVDNYINNYERFTDWC*CVVDLFRECESVV 137
           +P+ + +D Y N       +    ++++++CE  +
Sbjct: 173 IPNSIILDQYTNPGNPLAHYDQTAIEIWKQCEGKI 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,814
Number of Sequences: 438
Number of extensions: 3134
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)