Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10o01
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...   108   9e-25
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   3.5  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    25   8.0  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   8.0  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score =  108 bits (259), Expect = 9e-25
 Identities = 67/170 (39%), Positives = 93/170 (54%), Gaps = 1/170 (0%)
 Frame = +3

Query: 198 RLQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQAL 377
           RL  LR LM  +   L  Y++P+ DAH+SEY   ADARR +IS F GSAG AV+  + A 
Sbjct: 8   RLNKLRELMKERGYTL--YVVPSEDAHSSEYTCDADARRAFISGFDGSAGCAVIGETSAA 65

Query: 378 VWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWT 557
           ++TDGRY+ Q  +++D   WTLMKQ     PT E++     K  + VG+D   +T     
Sbjct: 66  LFTDGRYFNQASQQLD-ENWTLMKQGFTGVPTWEEYCTQMTKCNEKVGIDSSLITFPAAK 124

Query: 558 PIQTAL-KKISAQLVPISNNLVDDVRIELGDPAPKRSHNELAPLHVRYTG 704
            ++ +L  K  A LV   +NLVD   I  G   PK    +L    ++Y G
Sbjct: 125 ALRESLFLKSGAVLVGDHDNLVD---IVWGASRPKEPLEKLIVQEIKYAG 171


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 351 AVVTSSQALVWTDGRYYTQFEREVDL 428
           AV T +  ++WT G Y+   ++E+++
Sbjct: 317 AVSTENSVMLWTTGNYHWYLKKEINI 342


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 670 LCDLLGAGSPSSILTSSTRLFEI 602
           LCD +GAG   S +T+  R F +
Sbjct: 275 LCDAIGAGLVDSFMTTCGRAFRL 297


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +3

Query: 312 REWISAFTGSAGTAVVTSSQALVWTD 389
           R W++++ G  G     S + L+W +
Sbjct: 43  RSWMTSYVGFNGETAAISEEQLIWAE 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,778
Number of Sequences: 5004
Number of extensions: 58554
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)