Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10n19
         (289 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522...    27   2.4  
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427...    27   2.4  
08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860     25   7.4  
05_01_0322 - 2538320-2538742,2539349-2539521,2539764-2539854,254...    25   7.4  
08_02_0425 + 16975143-16975284,16975682-16975765,16977414-169774...    25   9.8  
07_03_1399 - 26274064-26274303,26274395-26274652,26274791-262749...    25   9.8  

>12_02_1096 +
           26050224-26051058,26051599-26051831,26051940-26052230,
           26052860-26052988,26053082-26053255,26053334-26053547,
           26053881-26053968,26054195-26054239,26056969-26057015,
           26057441-26057727,26057812-26058051,26058141-26058257
          Length = 899

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 218 FVYVQYLSIGYILIHLPE 165
           +  +  +S+GY+L+HLPE
Sbjct: 635 YAKISIISVGYLLLHLPE 652


>12_02_0178 -
           14941342-14941391,14941909-14942002,14942498-14942716,
           14943409-14943492,14943783-14944067,14944349-14944501,
           14944618-14944740,14945429-14945495,14946122-14946309,
           14947134-14947250,14947720-14947812,14948377-14948459,
           14948565-14948610
          Length = 533

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 179 LRCNQWINIVR 211
           LRCNQW N+VR
Sbjct: 155 LRCNQWCNVVR 165


>08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860
          Length = 335

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 13  RVCLVHTXCLTGIKNR 60
           RVC +H  C TG+ N+
Sbjct: 283 RVCTLHANCCTGLANK 298


>05_01_0322 -
           2538320-2538742,2539349-2539521,2539764-2539854,
           2540005-2540121,2540327-2540392,2540933-2541025,
           2541661-2541721,2542634-2542707,2542782-2542848,
           2543342-2543400
          Length = 407

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 248 YYLAANPLHVFVYVQYLSI 192
           Y L A+PLH+++ V Y ++
Sbjct: 30  YRLCAHPLHIWIVVDYTTV 48


>08_02_0425 +
           16975143-16975284,16975682-16975765,16977414-16977496,
           16977610-16977652,16978311-16978378,16978954-16979043,
           16981444-16981620,16982291-16982354,16982452-16982500,
           16983399-16983858
          Length = 419

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/30 (30%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 48  NKKSKLIY-FNCGIVVLYHNIWYNSKSTYT 134
           N+K ++I  +  G+ +LY +IW++S+  ++
Sbjct: 106 NEKPQVIQEYESGLCILYLSIWHSSRCDFS 135


>07_03_1399 -
           26274064-26274303,26274395-26274652,26274791-26274916,
           26275012-26275109,26275200-26275265,26275350-26275395
          Length = 277

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 97  YNTTMPQLK*ISFDFLFPSNXQCVRGRL 14
           + TTM  LK + +DF +     CV G L
Sbjct: 62  FGTTMAGLKVLGYDFDYDDFHACVHGTL 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,098,832
Number of Sequences: 37544
Number of extensions: 92419
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)