Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10n19
(289 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U56963-3|AAP31428.1| 312|Caenorhabditis elegans Serpentine rece... 33 0.033
U56963-11|AAB38127.1| 342|Caenorhabditis elegans Serpentine rec... 28 1.2
AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical ... 27 2.9
AF022982-1|AAB69937.1| 224|Caenorhabditis elegans Hypothetical ... 26 3.8
Z83104-5|CAC35810.1| 570|Caenorhabditis elegans Hypothetical pr... 26 5.0
AB012700-1|BAA89795.1| 570|Caenorhabditis elegans FLR-4 protein. 26 5.0
Z78412-1|CAB01655.1| 490|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z75955-7|CAB00121.1| 550|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical pr... 25 8.7
AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin syntha... 25 8.7
AC024791-13|AAF60665.1| 301|Caenorhabditis elegans Hypothetical... 25 8.7
>U56963-3|AAP31428.1| 312|Caenorhabditis elegans Serpentine
receptor, class v protein28 protein.
Length = 312
Score = 33.1 bits (72), Expect = 0.033
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -3
Query: 269 FYFHLVHYYLAA---NPLHVFVYVQYLSIGYILIH 174
FYFH YY+AA N ++ F+Y++ I ++ IH
Sbjct: 77 FYFHYQEYYIAAGTYNSIYYFLYIRCAGIVFLSIH 111
>U56963-11|AAB38127.1| 342|Caenorhabditis elegans Serpentine
receptor, class v protein32 protein.
Length = 342
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = -3
Query: 269 FYFHLVHYYLAA---NPLHVFVYVQYLSIGYI 183
FYF HYY+AA N ++ F+Y++ I ++
Sbjct: 80 FYFEYQHYYVAAASYNNIYYFLYIRCTGIIFL 111
>AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical
protein ZC132.4 protein.
Length = 831
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Frame = +2
Query: 140 CCFYRNFKFPAN-----VLRCNQWINIVRRQRHEEDW 235
C FYR + P +++CN+WI V + +W
Sbjct: 206 CLFYRIYAVPTTNDSFEIMKCNEWIEKVHLKVSITEW 242
>AF022982-1|AAB69937.1| 224|Caenorhabditis elegans Hypothetical
protein T23B12.5 protein.
Length = 224
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 281 LILFFYFHLVHYYLAANPLHVFVYVQ 204
+ L + FH+ ++YL +NP H + Q
Sbjct: 189 IFLIYAFHMSNFYLFSNPSHRILICQ 214
>Z83104-5|CAC35810.1| 570|Caenorhabditis elegans Hypothetical
protein F09B12.6 protein.
Length = 570
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 287 FFLILFFYFHLVHYYLAANPLHVFVYVQYLSIGYILIHL 171
F LI +F V Y +A N + QYL I ILI L
Sbjct: 442 FLLISYFVVRFVRYLIAINCNCDLMQPQYLIISGILIVL 480
>AB012700-1|BAA89795.1| 570|Caenorhabditis elegans FLR-4 protein.
Length = 570
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 287 FFLILFFYFHLVHYYLAANPLHVFVYVQYLSIGYILIHL 171
F LI +F V Y +A N + QYL I ILI L
Sbjct: 442 FLLISYFVVRFVRYLIAINCNCDLMQPQYLIISGILIVL 480
>Z78412-1|CAB01655.1| 490|Caenorhabditis elegans Hypothetical
protein M176.2 protein.
Length = 490
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 215 VYVQYLSIGYILIHLPET*NSDKSNRISISTFTVIPYIMVQHHN 84
V + Y GY H P T + R+ +ST P+I +Q N
Sbjct: 275 VAIVYFRAGYSPDHYPSTKEWEARERMELSTAIKTPWIGLQVAN 318
>Z75955-7|CAB00121.1| 550|Caenorhabditis elegans Hypothetical
protein R07B7.12 protein.
Length = 550
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +3
Query: 96 YHNIWYNSKSTYTNSVAFIGISSFRQMY 179
YH+I+Y + + ++ I SFR ++
Sbjct: 336 YHSIFYGKRDVFVEKISSIEDFSFRHLF 363
>Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical
protein T25G3.2 protein.
Length = 1322
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 281 LILFFYFHLVHYYLAANPLHVFVYVQYLSIGYILIH 174
++L F + +LAA LH F +V LSI ++ +
Sbjct: 325 IVLHFVMRGISRFLAALDLHPFSFVHPLSIAPLIAY 360
>AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin synthase
1 protein.
Length = 1322
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 281 LILFFYFHLVHYYLAANPLHVFVYVQYLSIGYILIH 174
++L F + +LAA LH F +V LSI ++ +
Sbjct: 325 IVLHFVMRGISRFLAALDLHPFSFVHPLSIAPLIAY 360
>AC024791-13|AAF60665.1| 301|Caenorhabditis elegans Hypothetical
protein Y47G6A.18 protein.
Length = 301
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 27 THXLFDGNKKSKLI 68
TH L DGN+K+KLI
Sbjct: 184 THPLSDGNQKTKLI 197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,628,394
Number of Sequences: 27780
Number of extensions: 93493
Number of successful extensions: 268
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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