Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10n18
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672...    36   0.019
06_02_0203 + 12986685-12988691                                         29   2.8  
04_03_0053 - 10286076-10286516,10286560-10287586,10287756-102880...    28   4.9  

>11_05_0065 +
           18766566-18766576,18767023-18767083,18767170-18767268,
           18767346-18767467,18767577-18767673,18767778-18767824,
           18768020-18768203,18768349-18768400,18768795-18768985,
           18769072-18770020,18770866-18771022,18771134-18771206,
           18771292-18771465,18771880-18771993,18772110-18772236,
           18772331-18772443,18772614-18772729,18772847-18773000
          Length = 946

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 28/93 (30%), Positives = 47/93 (50%)
 Frame = -2

Query: 592 T*SNLIYKLRKNIYIGINDIITFTKLLKFASLSDNFLCARLKL*LDITTQAFNFHFWFRS 413
           T SN +    K   +G+   I F+K+LK A++    LC RL+   ++T   +N    F+ 
Sbjct: 659 TVSNPVSGNEKCAVVGVQ--IFFSKILKLAAIRIRNLCERLRH-EELTVSVYNI---FKQ 712

Query: 412 IQHIESNLL*NRCVDGVLTRCAWCIFFICSLSL 314
           I   ++ L  NR VD ++  C + +  +  LSL
Sbjct: 713 ILDQQTALFFNRHVDQIILCCLYGVAKVSQLSL 745


>06_02_0203 + 12986685-12988691
          Length = 668

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +2

Query: 269 PIAETTPSVQAKTPVKRK---ATDEKYAPSTSGQHTVHTSISQQVTLNMLNAPEPEMEVE 439
           P A TT   +A  PV      A DE +  +T+G+H    +  Q  T +     + +   +
Sbjct: 492 PPATTTLDAEAAMPVPNSNAIAADEAHGNATAGEHDKKETAEQTTTTSASTVGQQQEARD 551

Query: 440 SLGGDVKL 463
            +G  VKL
Sbjct: 552 QVGQLVKL 559


>04_03_0053 -
           10286076-10286516,10286560-10287586,10287756-10288096,
           10288198-10288248
          Length = 619

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 287 PSVQAKTPVKRKATDEKYAPSTSGQHTVHTSISQQVTLNMLNAPEPE 427
           PS++  +P K +AT  K   ++   H     ISQ + L ++N+ + E
Sbjct: 75  PSLEKTSPEKSRATCYKCVSASKQVHWDEIGISQALALTIVNSAKDE 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,406
Number of Sequences: 37544
Number of extensions: 258134
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)