Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10n11
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    30   0.30 
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    29   0.70 
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    27   1.6  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    27   2.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   3.7  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   6.5  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    25   8.6  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    25   8.6  

>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 101 TEVIDALELAFKELDSEDSANMEEDTSNKTGLD 199
           TE +D L  + +EL S D+  +  DTS  +GLD
Sbjct: 139 TENLDELNFSTEELSSFDTTLLNSDTSKLSGLD 171


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +2

Query: 95  WATEVIDALELAFKELDSEDSANMEEDTSNKTGLDL-----SLNEKISVTPLYENI 247
           W T V D  +LA   ++ E  +N E D S   G         L+EK++ TPLY ++
Sbjct: 533 WQTTVFDDSDLATMGVNKESLSN-EMDYSKSLGTSSLEQVDDLDEKLTYTPLYVSL 587


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 137 ELDSEDSANMEEDTSNK-TGLDLSLNEKISVTPLYENIDIFYQST 268
           +++S  + N   +TS    GLD  LNE++S      N+ +F + T
Sbjct: 122 QVNSVQTTNTTSNTSKAPNGLDSELNERLSTLTNAHNVMLFLKGT 166


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 605 LSTSHPCHEKVFSCTTTSQFWSLLEG 528
           ++  HP  ++VFS T   QF+S + G
Sbjct: 580 IANDHPYAQRVFSLTCAPQFFSYING 605


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 311  PSHYSAYPEGTKLHLYSDRIYLCSHTEVLLKSSHLDSNLGQFYW 180
            P     Y     LHL+S   + C H + L +++   +NL Q  W
Sbjct: 1116 PEALQQYSPRIVLHLFSFFYWKCQHDDYLQENTSSKNNLLQKEW 1159


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 299 SAYPEGTKLHLYSDRIYLCSHTEVLLKSSHLDSNLGQF 186
           +A P+   L   SDR+Y C   ++LL+   LD    QF
Sbjct: 484 NADPKMYLLENLSDRLYFCKLAKLLLRKYPLDIAEHQF 521


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 146 SEDSANMEEDTSNKTGLDLSLNEKISVTPLYENIDIFYQSTDEVSFPL 289
           +EDSAN +E+++  T  +  + EK + TP++ N  +   S D  S  L
Sbjct: 529 NEDSANQKEESALGTSDNSDMYEKEN-TPIHHNESLNQLSKDLGSISL 575


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 146 SEDSANMEEDTSNKTGLDLSLNEKISVTPLYENIDIFYQSTDEV 277
           SE + N    T+ + G D   +E+ + +PL ENID  +  T E+
Sbjct: 205 SESNLNGPHATAGENGED---HEEATASPLDENIDYTHSRTLEL 245


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/40 (40%), Positives = 27/40 (67%)
 Frame = +2

Query: 104 EVIDALELAFKELDSEDSANMEEDTSNKTGLDLSLNEKIS 223
           E  D LEL+ +EL + +S++ EED + +   +LS NE++S
Sbjct: 59  EQADELELSDEELVALESSSDEEDGNAEE--NLSENEELS 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,857
Number of Sequences: 5004
Number of extensions: 34074
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)