Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10n11
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798     28   5.1  
11_03_0063 + 9515666-9516656,9517503-9518599                           28   6.7  
09_01_0073 - 1057560-1058043,1058199-1058385,1058754-1059062,105...    28   6.7  
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702...    28   6.7  
02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196           28   6.7  
07_01_0661 + 4968089-4969741                                           27   8.9  

>04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798
          Length = 575

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 137 ELDSEDSANMEEDTSNKTGLDLSLNEKISVTPLYENIDIFYQSTDEV 277
           E+     A ++ D  N   L+L   E+I+   L ENIDI+Y S   +
Sbjct: 455 EVRKRGGARIKPD--NLEALNLECEERINEYELSENIDIYYISNSNI 499


>11_03_0063 + 9515666-9516656,9517503-9518599
          Length = 695

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 137 ELDSEDSANMEEDTSNKTGLDLSLNEKISVTPLYENIDIFYQSTDEV 277
           E+     A ++ D  N   L+L   E+I+   L ENIDI+Y S   +
Sbjct: 471 EVRKRGGARIKPD--NLEALNLESEERINEYELSENIDIYYISNSNI 515


>09_01_0073 -
           1057560-1058043,1058199-1058385,1058754-1059062,
           1059427-1060269,1061572-1062552,1063189-1063516
          Length = 1043

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 137 ELDSEDSANMEEDTSNKTGLDLSLNEKISVTPLYENIDIFYQSTDEV 277
           E+     A ++ D  N   L+L   E+I+   L ENIDI+Y S   +
Sbjct: 528 EVRKRGGARIKPD--NLEALNLESEERINEYELSENIDIYYISNSNI 572


>03_05_0491 -
           24868261-24869383,24869482-24869561,24870193-24870249,
           24870567-24870660,24871013-24871099,24871188-24871347,
           24871440-24871674
          Length = 611

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 122 ELAFKELDSEDSANMEEDTSNKTGLDLSLNEKISVTPLYENIDIFYQ 262
           ++  +ELD+ +     E   N   L+   NEK+ +TP  +NIDI+ Q
Sbjct: 138 QMTVEELDANEKRAFLEWRRNLARLEE--NEKLVLTPFEKNIDIWRQ 182


>02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196
          Length = 933

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 179 SNKTGLDLSLNEKISVTPLYENIDIFYQSTDEV 277
           +N   L+L   E+I+   L ENIDI+Y S   +
Sbjct: 257 NNLEALNLESEERINEYELSENIDIYYISNSNI 289


>07_01_0661 + 4968089-4969741
          Length = 550

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 299 SAYPEGTKLHLYSDRIYLC-SHTEVLLKSSHLDSNLG 192
           SA PEG +LH  + ++ L  SHT V     HL S+ G
Sbjct: 77  SALPEGRQLHALAAKLGLAPSHTVVANSLLHLYSSCG 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,417,186
Number of Sequences: 37544
Number of extensions: 201655
Number of successful extensions: 397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)