Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10n11
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40955-4|AAA81752.1|  297|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>U40955-4|AAA81752.1|  297|Caenorhabditis elegans Hypothetical
           protein F48B9.2 protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 101 TEVIDALELAFKELDSEDSANMEEDTSNKTGLDLSLN 211
           +EVID  EL  +E++ E    M+E+T  KT  ++ LN
Sbjct: 133 SEVIDVGELEIREMEVEIEEIMDEETDEKTN-EIDLN 168


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 248  LCSHTEVLLKSSHLDSNLGQFYWTC 174
            +C+ T+ L   S  DSNL +FYW C
Sbjct: 978  VCNQTQRLKTRS--DSNLNRFYWVC 1000


>U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical
           protein F08F8.9c protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 98  ATEVIDALELAFKELDSEDSANMEEDTSNKTGLDLSLNEKISVTPLYENIDIF--YQSTD 271
           +T  + +  +A  E  SE SA+  +D +       S     S  P     ++F  YQ+++
Sbjct: 305 STSSVISFGVAVHEPISESSASAYDDPTRNHWNPQSATSDYSTVPTSGTSNVFPSYQTSE 364

Query: 272 EVSFPLDMPSS 304
             SFP   PSS
Sbjct: 365 YSSFPNQTPSS 375


>U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical
           protein F08F8.9a protein.
          Length = 626

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 98  ATEVIDALELAFKELDSEDSANMEEDTSNKTGLDLSLNEKISVTPLYENIDIF--YQSTD 271
           +T  + +  +A  E  SE SA+  +D +       S     S  P     ++F  YQ+++
Sbjct: 305 STSSVISFGVAVHEPISESSASAYDDPTRNHWNPQSATSDYSTVPTSGTSNVFPSYQTSE 364

Query: 272 EVSFPLDMPSS 304
             SFP   PSS
Sbjct: 365 YSSFPNQTPSS 375


>U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical
           protein F08F8.9b protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 98  ATEVIDALELAFKELDSEDSANMEEDTSNKTGLDLSLNEKISVTPLYENIDIF--YQSTD 271
           +T  + +  +A  E  SE SA+  +D +       S     S  P     ++F  YQ+++
Sbjct: 305 STSSVISFGVAVHEPISESSASAYDDPTRNHWNPQSATSDYSTVPTSGTSNVFPSYQTSE 364

Query: 272 EVSFPLDMPSS 304
             SFP   PSS
Sbjct: 365 YSSFPNQTPSS 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,947,262
Number of Sequences: 27780
Number of extensions: 183337
Number of successful extensions: 432
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)