Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10n11
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.2  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 518 ITSFLQEETKIEKLLYKKTLSHDMDAKLRD 607
           +  F    T +   LY+  L+ D+  KLR+
Sbjct: 303 LAGFETSSTTMSNALYELALNQDVQKKLRE 332


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 398 NSTRRIKKEIRNKRTSFLGIEGQVXXXXXXXXXXXXPRPDITSFLQEETKIEKL 559
           N+  R   E  N+R S LG   +               P+ +S LQE+TKI+ L
Sbjct: 363 NAVIRNFNESENRRNSCLG-STETYYSKHNTQQFTQYIPESSSNLQEKTKIDLL 415


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 444 LVRLLRISFLIRRV 403
           LVRLLR+S L+R V
Sbjct: 216 LVRLLRLSRLVRYV 229


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 444 LVRLLRISFLIRRV 403
           LVRLLR+S L+R V
Sbjct: 216 LVRLLRLSRLVRYV 229


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 444 LVRLLRISFLIRRV 403
           LVRLLR+S L+R V
Sbjct: 216 LVRLLRLSRLVRYV 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,150
Number of Sequences: 438
Number of extensions: 2148
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)