Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10n07
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.94 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.94 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.6  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   6.6  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   6.6  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   6.6  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   6.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.6  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   6.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.8  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
 Frame = -1

Query: 611 SRLRKNGSIFT---AIAILVKGPI------AIISKLPGYNFDSSIIRK 495
           +RLR N  +FT   +IA+L +         AI    P Y FDSS+I +
Sbjct: 131 ARLRMNSGMFTTAFSIAVLYRPDTKYMKFPAIYEIYPNYFFDSSVIEE 178


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
 Frame = -1

Query: 611 SRLRKNGSIFT---AIAILVKGPI------AIISKLPGYNFDSSIIRK 495
           +RLR N  +FT   +IA+L +         AI    P Y FDSS+I +
Sbjct: 131 ARLRMNSGMFTTAFSIAVLYRPDTKYMKFPAIYEIYPNYFFDSSVIEE 178


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 164 TSPKPESSLTTTEVPMIL*RYSQRCCMRRNSMD 262
           T+PK E    TT  P+I  R  Q+    +N  D
Sbjct: 789 TTPKKERKTATTTQPVISSRKEQKKSEEKNIND 821


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -1

Query: 119 NHPDKANAKKTTIILINRNKITRRFILRTTRMKNT 15
           +HP +  A  TTI  I     T      TT   NT
Sbjct: 646 SHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNT 680


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +1

Query: 265 KVIGLTTTHGNVNEDQVYVNSQRILGVANRRDVPIYRGCSEP 390
           K I     + N N  ++Y N   I  +     VPIY G   P
Sbjct: 310 KTIHNNNNYNNYNNKKLYYNINYIEQIPVPVPVPIYYGNFPP 351


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 171 GDVINSSFRFTAFFAKNQPPRQS*RQKNHYYTDQQ 67
           GD    S R +   + N P  Q   Q N++YT  Q
Sbjct: 95  GDATGLSNRSST--SSNDPKNQYKNQNNNHYTSHQ 127


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 60  NNTTIHTSNDTYEK 19
           +N TIH +N+ Y+K
Sbjct: 86  SNKTIHNNNNNYKK 99


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 60  NNTTIHTSNDTYEK 19
           +N TIH +N+ Y+K
Sbjct: 86  SNKTIHNNNNNYKK 99


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 60  NNTTIHTSNDTYEK 19
           +N TIH +N+ Y+K
Sbjct: 86  SNKTIHNNNNNYKK 99


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 60  NNTTIHTSNDTYEK 19
           +N TIH +N+ Y+K
Sbjct: 86  SNKTIHNNNNNYKK 99


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 334 ILGVANRRDVPIYRGCSEPLI 396
           +LGV  +R+   Y  C EP I
Sbjct: 199 LLGVPGKRNEIYYNCCPEPYI 219


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 60  NNTTIHTSNDTYEK 19
           +N TIH +N+ Y+K
Sbjct: 319 SNKTIHNNNNNYKK 332


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 238 LYEEKFNGPKVIGLTTTHGNVNEDQVYVN--SQRILGVANRRDVPIYRGCSEP 390
           +Y      P+ I    T  + N   ++++  +Q++ G+    ++  Y G +EP
Sbjct: 381 IYSSLLRYPRSI-FRQTDDHQNSPSIFISDDNQKLTGIVQISNMTEYNGLTEP 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,575
Number of Sequences: 438
Number of extensions: 4408
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)