Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10n04
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    51   1e-07
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    46   4e-06
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    26   4.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.6  

>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 22/59 (37%), Positives = 37/59 (62%)
 Frame = +1

Query: 403 WGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQ 579
           W P  L+QN    ++V    PWW +I+L T+ VR+ + P++I S RNS +++   PE++
Sbjct: 65  WWPYALIQNTAYTINVYAGAPWWVSIILTTLGVRLALTPVMIASFRNSTKLSVIQPEMK 123


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 18/71 (25%), Positives = 39/71 (54%)
 Frame = +1

Query: 409 PVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQ 588
           P  ++QN    LH+   +PWW +I    + +R+ +FP+++   + SA++    P++    
Sbjct: 96  PHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFPIMLKMMKTSAKLAIINPKVAEHM 155

Query: 589 MKMTQARQTGN 621
             +++A+  GN
Sbjct: 156 SVLSKAKAEGN 166


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 545 LFLCDKITSGNITTLTTIVPKTIAPHHGTSKVTCRYSKQ 429
           L LC +   G  T   T+   TI  H G  KV  +++++
Sbjct: 31  LMLCGESGLGKTTFCNTLFSTTIKSHMGPEKVRAKHAEK 69


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/79 (21%), Positives = 38/79 (48%)
 Frame = +1

Query: 412  VGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQM 591
            +G+ +N    + +   + ++ +++LG + +    FPL   S  N A+ N     ++LL +
Sbjct: 1800 IGIKKNDVVAVFIDKSLDYY-SLMLGVLRIGAFFFPLEHCSSLNFAKENLLRTNVKLLIV 1858

Query: 592  KMTQARQTGNQIEAARYAQ 648
                  +  NQ+E  ++ Q
Sbjct: 1859 DKFLPFEDVNQVEIDKFRQ 1877


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,674
Number of Sequences: 5004
Number of extensions: 56893
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)