Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10n03
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-10|AAO38593.1|  610|Caenorhabditis elegans Hypothetical p...    28   5.0  
AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical...    28   5.0  
U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U55370-3|AAA97995.1|   87|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine rec...    27   8.7  

>U41263-10|AAO38593.1|  610|Caenorhabditis elegans Hypothetical
           protein T19D12.2a protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 196 AEDIYNLEIRPDDIWVIPFSRSGTTWLQELVWLVNN 303
           A+ + +L+   D +++  FS    T    LVWL+NN
Sbjct: 491 AKSLIDLQSNVDTLYINAFSMRDATISDGLVWLINN 526


>AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical
           protein Y113G7A.11 protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/90 (21%), Positives = 37/90 (41%)
 Frame = +1

Query: 211 NLEIRPDDIWVIPFSRSGTTWLQELVWLVNNNLDYVAAASQPLSKRYAYIEYVTQKSDAA 390
           +++    D+ +  + + GTTWLQ +   +    DY A     L  +   IE +       
Sbjct: 81  SMQFGETDVVIATYPKCGTTWLQHITSQLIKGHDYKAGKGNELCVQSPMIERMGAAFADN 140

Query: 391 KKMPQSIRPEQRATFESFETLPNLPSPRYV 480
            K P+ ++      F  +  +P  P  +Y+
Sbjct: 141 IKGPRVLKTH----FHHY-NIPKYPDTKYI 165


>AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical
           protein R52.1 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 242 SSLSLDLGQHGFKN*YGWSIITWITWPLLLNPSVKDTLIL 361
           S +S ++ +H F+   GW    +I+W  L N  + D  I+
Sbjct: 81  SKVSSEIFKHKFEKNEGWGYFKFISWDTLTNDYLIDDCII 120


>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 374 RNLTLRKRCRNPSDLNRELRLRASKLCQ---IYRLRDMLK 484
           RN+  +K  R P D + E+R R S LCQ   IY  R+ L+
Sbjct: 175 RNVFFKKVTRIPYDSSTEIRDRLSTLCQKRNIYVTREELE 214


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 374 RNLTLRKRCRNPSDLNRELRLRASKLCQ---IYRLRDMLK 484
           RN+  +K  R P D + E+R R S LCQ   IY  R+ L+
Sbjct: 175 RNVFFKKVTRIPYDSSTEIRDRLSTLCQKRNIYVTREELE 214


>Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical
           protein VC27A7L.1 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 166 YLATPGYQDHAEDIYNLEIRPDDIW 240
           YL TP Y+D+  D+Y + I     W
Sbjct: 213 YLETPFYRDYNSDVYKVPILGSTYW 237


>U55370-3|AAA97995.1|   87|Caenorhabditis elegans Hypothetical
           protein K03B4.4 protein.
          Length = 87

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 442 FETLPNLPSPRYVKSHLPLSRLPP 513
           F+ LPN+ SP+Y +S +  SRL P
Sbjct: 34  FKPLPNVRSPQYSRSRIGGSRLLP 57


>U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 29 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 484 SHLPLSRLPPALLDTAKVFYVARDPRDVAVSLHFAVKLFGYFSDE 618
           S++P+   PPA   +   FY   D R + +   F   LF Y  ++
Sbjct: 172 SYVPMCNYPPASSVSGTKFYFINDSRIIIMGTIFMCSLFLYIHNK 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,790,954
Number of Sequences: 27780
Number of extensions: 327770
Number of successful extensions: 976
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)