Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10n02
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    31   0.15 
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   2.4  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    27   3.1  
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom...    26   4.1  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   7.2  
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    25   9.5  

>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 22/59 (37%), Positives = 29/59 (49%)
 Frame = +2

Query: 470 SLEKNFLGIWWPVSTSKTVFQLTDSLNGKLVLNQNNKDRPNSFVAVNKPVYHYVKLPEK 646
           SLEK  +GI W  S S T         G+  L +NNKD P     + K  Y Y++L +K
Sbjct: 153 SLEKKEIGIVWSKSFSTTA--------GRANLKRNNKDAP-----LGKKTYAYIELSDK 198


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -1

Query: 471 EILVTYCPALYK*RGYSTIHVHEFFASIKDSLCRKSSKNEYLRVSSL*SDTIALKVTLEP 292
           + L+T C A+   + +S +H+ +FF+    S   + S   +LR+  + SD   L   LE 
Sbjct: 798 DTLITNCCAM---QSFSIMHLPKFFSITMSSNLSERSLVNFLRLLHVVSDNWELNEGLEK 854

Query: 291 ST 286
            T
Sbjct: 855 ET 856


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 632 SHSDTLVY*QQQNYLACLYCSDSELIYHLANLLTEIQFY 516
           S  DTL   +Q  Y + +Y +DS   Y+LA+L T  Q Y
Sbjct: 107 SSKDTLE--KQPKYSSQIYLTDSFENYYLASLPTNYQLY 143


>SPAC1B3.01c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 608 NKPVYHYVKLPE 643
           +KPV HY+KLPE
Sbjct: 116 HKPVLHYIKLPE 127


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 236 DIAVSALKLSITNN--GPAVLGSNVTFRAIVSDYNEETLKYSF 358
           D +     LS+  N  G + + +NVTF  IV  Y E+  +++F
Sbjct: 53  DASYYTRNLSVVFNILGYSSVDANVTFDIIVEAYGEQRARFTF 95


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +2

Query: 275 NGPAVLGSNVTFRAIVSDYNEETLKYSFFDDLRHSESFIEAKNSCTWIVEYP 430
           N   +L     +R+ ++   E TL+ +  + + ++  + E +NS    ++YP
Sbjct: 110 NPHVILMERQRYRSGIATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYP 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,058
Number of Sequences: 5004
Number of extensions: 54402
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)