Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10n02
         (654 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069105-1|AAL39250.1|  573|Drosophila melanogaster GH12359p pro...    46   6e-05
AE014297-2822|AAF55782.2|  515|Drosophila melanogaster CG16953-P...    46   6e-05
AY461249-1|AAR85207.1| 1325|Drosophila melanogaster epidermal gr...    28   9.6  
AE013599-1777|AAF58328.2|  878|Drosophila melanogaster CG30484-P...    28   9.6  

>AY069105-1|AAL39250.1|  573|Drosophila melanogaster GH12359p
           protein.
          Length = 573

 Score = 45.6 bits (103), Expect = 6e-05
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
 Frame = +2

Query: 245 VSALKLSITNNGPAVLGSNVTFRAIVSDYNEET-----LKYSFFDDLRHSESFIEAKNSC 409
           V+   + IT    A++GS +   A + D ++        ++++ D   H +       S 
Sbjct: 24  VTCYTVIITAPEQALIGSTINVSAQLFDGDKPADGGRPYRFTWSDSAGHRKVIETNSVSS 83

Query: 410 TWIVEYPRHLYKAGQYVTKISLEKNFLGIWWPVSTSKTVFQLTDSLNGKLVLNQNNKDRP 589
            W V + +   +   +V K+ +EK     W   + +    +L   L G L L QNN  RP
Sbjct: 84  NWSVVFTQE--QPATHVIKVEVEKFVTFFWVTEAKASRGIKLDSLLGGSLELIQNNVMRP 141

Query: 590 NSFVAVNKPVYHYVKLPEKEM 652
           + FV+  + V H V L + ++
Sbjct: 142 HEFVSTQEAVNHSVSLSDADL 162


>AE014297-2822|AAF55782.2|  515|Drosophila melanogaster CG16953-PA
           protein.
          Length = 515

 Score = 45.6 bits (103), Expect = 6e-05
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
 Frame = +2

Query: 245 VSALKLSITNNGPAVLGSNVTFRAIVSDYNEET-----LKYSFFDDLRHSESFIEAKNSC 409
           V+   + IT    A++GS +   A + D ++        ++++ D   H +       S 
Sbjct: 24  VTCYTVIITAPEQALIGSTINVSAQLFDGDKPADGGRPYRFTWSDSAGHRKVIETNSVSS 83

Query: 410 TWIVEYPRHLYKAGQYVTKISLEKNFLGIWWPVSTSKTVFQLTDSLNGKLVLNQNNKDRP 589
            W V + +   +   +V K+ +EK     W   + +    +L   L G L L QNN  RP
Sbjct: 84  NWSVVFTQE--QPATHVIKVEVEKFVTFFWVTEAKASRGIKLDSLLGGSLELIQNNVMRP 141

Query: 590 NSFVAVNKPVYHYVKLPEKEM 652
           + FV+  + V H V L + ++
Sbjct: 142 HEFVSTQEAVNHSVSLSDADL 162


>AY461249-1|AAR85207.1| 1325|Drosophila melanogaster epidermal
           growth factor receptor protein.
          Length = 1325

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +2

Query: 338 ETLKYSFFDDLRHSESFIEAKNSCTWIVEYPRHLYKAGQYVTKISLEKNFLGIWWPVSTS 517
           E L  SF D++R    +I   +     V +P+     G+ +  +S+E+    ++   S  
Sbjct: 43  ENLDLSFLDNIREVTGYIXISHVXVKKVVFPKLQIIRGRTLFSLSVEEEKYALFVTYSKM 102

Query: 518 KT--VFQLTDSLNGKLVLNQN 574
            T  +  L D LNG++  + N
Sbjct: 103 YTLEIPDLRDVLNGQVGFHNN 123


>AE013599-1777|AAF58328.2|  878|Drosophila melanogaster CG30484-PA
           protein.
          Length = 878

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 506 VSTSKTVFQLTDSLNGKLVLNQNNKDRPNSFVAVNKPVYH 625
           +   K  + + DS+  + VLNQ N   P S++   K  Y+
Sbjct: 540 IQLKKFYYYIKDSMADRKVLNQMNSKNPISYLKSEKSTYY 579


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,411,266
Number of Sequences: 53049
Number of extensions: 516901
Number of successful extensions: 1341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)