Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10n02
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical pr...    32   0.41 
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    29   2.9  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    29   2.9  
AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical
           protein F38B7.4 protein.
          Length = 325

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 311 RAIVSDYNEETLKYSFFDDLRHSESFIEAKNSCTWIVEYPRHLYKAGQYVTKISLEKNFL 490
           RA V+ Y   T     F  +  S   I +K   TW +     LY A +Y+T +     F+
Sbjct: 63  RAFVNLYILITNHLGLFVPMTLSGKAIVSKTLETWAISMSNSLYMANEYLTVVISVNRFI 122

Query: 491 GIWWPV 508
            +++P+
Sbjct: 123 SLFFPL 128


>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
           protein 2 protein.
          Length = 1262

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 236 DIAVSALKLSITNNGPAVLGSNVTFRAIVSDYNEETLKYSFFDDLRHSESFIEAKNSCTW 415
           DI   AL L   +N          F   ++ Y+EE  +++ F+D+  SE    A N  TW
Sbjct: 28  DIEARALPLLYRSNFDTNFEDRSAFVTGIAKYSEEATRHAQFNDML-SEGLQHAANMYTW 86


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
           protein.
          Length = 1262

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 236 DIAVSALKLSITNNGPAVLGSNVTFRAIVSDYNEETLKYSFFDDLRHSESFIEAKNSCTW 415
           DI   AL L   +N          F   ++ Y+EE  +++ F+D+  SE    A N  TW
Sbjct: 28  DIEARALPLLYRSNFDTNFEDRSAFVTGIAKYSEEATRHAQFNDML-SEGLQHAANMYTW 86


>AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical
           protein K08D9.2 protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 437 NDVDI-LLSMYMSFSLR*KTHYVANHQKMN 351
           N+ D  +LS Y  F     THY+  H+K+N
Sbjct: 224 NEYDFKILSYYAKFGYAEYTHYITQHKKLN 253


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 160  KVINLNLQTFHNGPLCLLPFFNFYLRHSCFCFETVNYKQW 279
            K++N+  +TF+ GPL ++P FN      C   +T  +  W
Sbjct: 1169 KMVNITGRTFYCGPLPVVPAFNPEQTTCCDPEKTGLWNDW 1208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,335,422
Number of Sequences: 27780
Number of extensions: 295594
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)