Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10m24
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 47 3e-06
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 38 0.002
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 33 0.038
SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa... 32 0.089
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 29 0.83
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 27 1.9
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 26 4.4
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 7.7
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ... 25 7.7
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 46.8 bits (106), Expect = 3e-06
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Frame = +1
Query: 313 LSVTIAQAKLVKNYGLT-RMDPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLP-PGV 486
L V I +AK + N L + PY RVG + T TD G+ P WN V+ +P
Sbjct: 9 LVVRIWKAKNLPNKALVGKQSPYCVCRVGEVVKRTQTDKRSGQEPSWNAVLEFNIPSESY 68
Query: 487 NTIYLEIFDECSFTMDELIAWTHITIPQAVLNGETHEDWYPLNGK 621
+ + + +F E LI T ++ +A + E +WY L +
Sbjct: 69 HIMKITVFHEGFRKHPHLIGDTVLSFEKA-MKEELQSEWYELKNE 112
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/93 (24%), Positives = 38/93 (40%)
Frame = +1
Query: 310 RLSVTIAQAKLVKNYGLTRMDPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLPPGVN 489
RLSV A + + DPY RV VG+ + P WN++++ +
Sbjct: 760 RLSVIKANDLVNVELPTRKSDPYARVIVGNSVVARTVYTPNNLNPIWNEILYVPIMADTK 819
Query: 490 TIYLEIFDECSFTMDELIAWTHITIPQAVLNGE 588
TI LE D D + + I + + + N +
Sbjct: 820 TIDLEAMDYEESGNDRSLGYASINVQKYIRNAK 852
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 33.1 bits (72), Expect = 0.038
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Frame = +1
Query: 268 YGAAVPQSGPPMT-----ARLSVTIAQAKLVKNYGLTRMDPYVRVRVGHCIYETHTDPSG 432
+ A VP SG +T L T+ Q K + N R Y ++ + + T
Sbjct: 553 FHAVVPDSGEEITKVDGPGVLQFTVHQCKELSNDPSKRPTAYAKLIINNKEVYTTRKIKK 612
Query: 433 GKTPRWNKVIHCLLPPGVN-TIYLEIFDECSFTMDELIAWTHITIPQAVLNGETHEDWYP 609
P W + LLP G N T+ ++IF E S + ++++ +T W+P
Sbjct: 613 NNNPSWEESFGTLLPEGKNATLGVQIFTEES---EHPFGTANVSLQDLFAATKTGLLWFP 669
Query: 610 L 612
L
Sbjct: 670 L 670
>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
Psf2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 31.9 bits (69), Expect = 0.089
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +3
Query: 588 NSRRLVPPEWKTRGRLG--RDDQSCNELFS 671
N R+VPPEW G+L RDD+ NE FS
Sbjct: 66 NLARIVPPEWMEIGKLENIRDDELENETFS 95
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 28.7 bits (61), Expect = 0.83
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -1
Query: 642 PFQAVPLFSIQGVPVFVSFTIQNGLRYSDVGPSNQLVHCK*ALVKDLQIYCIHTGW 475
P V I PV + + +QN L+ S V + +L + ++ ++ + TGW
Sbjct: 4 PLTEVKYLLINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVAAFAYMFAMSTGW 59
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 426 RISVSLVYTMSNTHTNIRVHTS*SIIFNKLSLSYSDT*SR 307
R + S ++ M I+VH + S+I +K + SY+D +R
Sbjct: 586 RFAFSCIWEMDENANIIKVHFTKSVIASKEAFSYADAQAR 625
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = +1
Query: 340 LVKNYGLTRMDPYVRVRVGHCIYETHTDPSGGKTPRWN----KVIHCLL---PPGVNTIY 498
L+KN T +DPY+R+R+ + ++ P P +N KV+ L PG++ ++
Sbjct: 47 LLKNI-YTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVF 105
Query: 499 LEIFDECSFTMDELIAW 549
+ ++E +F + + +
Sbjct: 106 VSGWEEYTFVSKQALGF 122
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -1
Query: 396 SNTHTNIRVHTS*SIIFNKLSLSYSDT*SRCHWRATLWYCSTI 268
S + T+ +V++ +I N++S + S ++ LWYC+ +
Sbjct: 1267 SISSTSFKVYSQLTIFANRVSFNNSTAIPFFSTKSVLWYCNRL 1309
>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 289 SGPPMTARLSVTIAQAKLVKNYGLTRMDPYVRV 387
+G P T+ LSVT V L R DP+ ++
Sbjct: 347 TGQPWTSTLSVTQTDLASVLEICLQRSDPFTKI 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,867
Number of Sequences: 5004
Number of extensions: 57733
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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