Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10m21
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 31 0.12
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 31 0.21
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.0
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 27 2.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.5
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 26 4.6
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 26 6.1
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 26 6.1
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 8.1
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 549 FSN--HIKYLDISHNKITNLDPLVHFFHLSSLIADHN 653
FSN +++YLDIS+N++ +L L HL L D N
Sbjct: 664 FSNLLNLQYLDISYNQLEDLTGLSSLIHLRELKVDSN 700
Score = 29.9 bits (64), Expect = 0.38
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 495 LTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITNLDPL 611
L LA L EVP+ I N ++ LD+SHN I++++ L
Sbjct: 872 LELANVQLKEVPKYIATSMPN-LRVLDLSHNYISDIESL 909
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 495 LTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITNL 602
L L+Y +L E+P FS+ +K+L +S N++ NL
Sbjct: 835 LNLSYNYLTEIPSKFFQNFSD-LKHLFVSGNELANL 869
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = -3
Query: 523 SYSHS*ARVSFVESSSLSTIKLGDIMASVMSVIESTTISLDRSTEITPSSGTLEQLA 353
+Y+ S A S + SSS ++ L + S STT + S+ +T SS T LA
Sbjct: 64 NYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLA 120
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 259 MFLIVSIYLPILVYFVIHCVQN 194
+FLI IY P YFV H +QN
Sbjct: 380 LFLISYIYGPFAEYFVPHYIQN 401
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = -3
Query: 544 STIVLGTSYSHS*ARVSFVESSSLSTIKLGDIMASVMSVIESTTISLDRSTEITPSSGT 368
S+ V+ +S S S + S + SSSLST + +S S S + S ST + SS +
Sbjct: 212 SSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSS 270
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 4.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 640 INDDKWKK*TRGSKFVILLWLISKYFM 560
+ D W + T GS F++ +W++ F+
Sbjct: 248 LTDPIWNQYTAGSWFMLFIWIVYSIFL 274
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 510 EWLYEVPRTIVDKFSNHIKYLDISHNKITNLDPLVHFFHLS 632
EWL+ RT+ K ++I + H++ L +V LS
Sbjct: 213 EWLFRKTRTVAQKTDSNILLANAWHHRADALTGMVSLLALS 253
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.8 bits (54), Expect = 6.1
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +3
Query: 330 KYK*LSIHASCSSVPDEGVISVDLSRDIVVDSMTDMTEAI--ISPNLIVD--NEEDSTKL 497
KYK +S + S +V +G + D S D V+ S+ D+ ++ I + D EE+ T
Sbjct: 637 KYKRISRNRSTKNVKRDGDHNGDDS-DYVIRSLGDVLQSDEDIERWHLYDYTKEEEDTMA 695
Query: 498 TLAYEWL 518
T A+EW+
Sbjct: 696 TEAFEWI 702
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 480 EDSTKLTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITNLDP-LVHFFHLSSLIADHNP 656
E++ L L++ L E+P +++ I L + HN I ++ P ++ F L L N
Sbjct: 27 ENALTLDLSHLNLRELPYEQLERIQGRIARLALGHNFIKSIGPEILKFTRLRYLNIRSNV 86
Query: 657 ITE 665
+ E
Sbjct: 87 LRE 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,655
Number of Sequences: 5004
Number of extensions: 52629
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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