Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10m19
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 157 2e-39
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 74 2e-14
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 33 0.045
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 31 0.18
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 30 0.24
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 28 0.97
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 28 1.3
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 27 3.0
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 3.0
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 26 5.2
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 26 5.2
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 25 6.9
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 25 6.9
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 25 6.9
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 6.9
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.1
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 157 bits (380), Expect = 2e-39
Identities = 72/124 (58%), Positives = 99/124 (79%), Gaps = 1/124 (0%)
Frame = +1
Query: 265 GIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLV 444
G+R +L+GPPG+GKGTQAP +++KY + HL+TGDMLR++V+ ++LG+ KK+MD+G LV
Sbjct: 3 GMRLILVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLV 62
Query: 445 SDEMVVDMI-DKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDS 621
SD++V MI D+ L+ PECKNGF+LDGFPRTV QAEKL LL + K L+ V+E ++D
Sbjct: 63 SDDIVTGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDE 122
Query: 622 LLVR 633
LLVR
Sbjct: 123 LLVR 126
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 73.7 bits (173), Expect = 2e-14
Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Frame = +1
Query: 280 LLGPPGSGKGTQAPRLKEKY-CVCHLSTGDMLRAEVS-SGSDLGRRLKKVMDEGKLVSDE 453
+LG PG+GKGTQ RL EK+ H+S GD LR E + GS G +K+ + +GK+V E
Sbjct: 7 VLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIVPME 66
Query: 454 MVVDMIDKNLDQPECK--NGFLLDGFPRTVPQAEKLDDLLAKRKTAL 588
+ + +++ + + K + FL+DGFPR + Q E + + K AL
Sbjct: 67 ITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFAL 113
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 32.7 bits (71), Expect = 0.045
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Frame = +1
Query: 247 PDEDPLGIRAVLLGPPGSGKGTQAPRLKEKYCVCHLS--TGDML----RAEVSSGSDLGR 408
PDE P + ++GPPG+GK T L +Y +S TG + + + +
Sbjct: 68 PDEAPPPVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITGPITVVAGKKRRITFLECPN 127
Query: 409 RLKKVMDEGKLVSDEMVVDMIDKN----LDQPECKNGFLLDGFPRTVPQAEKLDDLLAKR 576
L ++D K+ ++V+ +ID N ++ E N G PR + L DL K
Sbjct: 128 DLSSMIDVAKIA--DLVLLLIDANFGFEMETMEFLNILAPHGMPRIMGVLTHL-DLFKKT 184
Query: 577 KTALDA 594
T +A
Sbjct: 185 STLREA 190
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 30.7 bits (66), Expect = 0.18
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 235 TKLKPDEDPLGIRAVLLGPPGSGKGTQAPRLKEK 336
T + P P V++GP GSGK T A + EK
Sbjct: 4 TPINPTNQPYKYVFVVIGPAGSGKTTMAKAVSEK 37
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 30.3 bits (65), Expect = 0.24
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 316 APRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQP 492
+P L C S +MLR D G +K++ E + S ++D+++ QP
Sbjct: 183 SPNLLRVNAPCRKSLSEMLRELKDIEDDYGSNEEKILQEFESFSSSSSESLVDRDISQP 241
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 28.3 bits (60), Expect = 0.97
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +1
Query: 259 PLGIRAVLLGPPGSGKGTQAPRL-KEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEG 435
P GI ++ GPPG+GK A + E L G + ++++ S+ L+K +E
Sbjct: 258 PRGI--LMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESE--SNLRKAFEEA 313
Query: 436 KLVSDEMV-VDMIDKNLDQPECKNG 507
+ S ++ +D ID + E NG
Sbjct: 314 EKNSPAIIFIDEIDSIAPKREKTNG 338
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/72 (25%), Positives = 28/72 (38%)
Frame = +1
Query: 265 GIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLV 444
G+R G P AP EK TGD+ +E+S+ + + +D G +
Sbjct: 171 GVRKSKAGAPSDPSSVHAPSSLEKPA----GTGDLPSSEISTKAPASTTVSSSVDPGTIN 226
Query: 445 SDEMVVDMIDKN 480
D + D N
Sbjct: 227 EDSSMKDHTTSN 238
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 3.0
Identities = 27/103 (26%), Positives = 47/103 (45%)
Frame = +1
Query: 313 QAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQP 492
+AP+L+EKY +C + T L + +G + VMDE + + ++ D L
Sbjct: 159 KAPKLREKYDMC-IGTPMRLVQAIQTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSAC 217
Query: 493 ECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDS 621
N F T+P ++++ LAK T I G++D+
Sbjct: 218 TSSN-ICKSLFSATIP--SRVEE-LAKVVTVDPIRIIVGLKDA 256
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 17 FEMSSNLILSVFIFI*STCFELNMYGFDLFSPYNFFVMDFVSLCLSAISICLYRALIN 190
F SN+I+SV +FI Y DL N ++ C+ AIS L +A ++
Sbjct: 195 FRPCSNIIVSVLVFI------FTNYSLDLSKEKNVAALEEALNCMIAISSYLAKASVS 246
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 25.8 bits (54), Expect = 5.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 126 LWTLFPFACRLFRFVCT 176
+WTL PFA + +CT
Sbjct: 264 VWTLLPFAFGFYNLICT 280
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 352 LSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV-VDMIDKNLDQPECKNGFLLDGFP 528
L TG ++ V + G K+ + K + ++ +++++ N+D PE N F
Sbjct: 211 LMTGKKIKGTVLIDAANGVGAAKIKELAKYIDPKLFPIEIVNDNIDNPELLNNSCGADFV 270
Query: 529 RT 534
RT
Sbjct: 271 RT 272
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -2
Query: 146 KGKQSP*RKNYKVRKGQSHTYLIQNKWI 63
K S ++N+++R+G++ +YL Q W+
Sbjct: 682 KKSHSSYKENFQLRRGKTVSYLNQKLWL 709
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 349 DKHNTFLSDEEPESPYRIQEGQVARPLFLKD 257
D H++ L+DE ES R+QE + + F+ D
Sbjct: 271 DPHSSSLADEYRESNKRLQESKESCARFILD 301
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 361 QWIGDKHNTFLSDEEPESPYRIQEGQVARPLFLKD 257
QW+G DE+P R+Q+ A P+FL D
Sbjct: 63 QWLGWCGQEIPEDEKPMIIQRLQDECSAIPVFLDD 97
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 268 FLKDPHQVLVSWLQRPVPYHQILKPS 191
F K ++ L PV YH LKPS
Sbjct: 625 FNKSNVHEIIQLLNEPVKYHNFLKPS 650
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 277 VLLGPPGSGKGT 312
V++GPPGSGK T
Sbjct: 6 VVVGPPGSGKST 17
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,653
Number of Sequences: 5004
Number of extensions: 53509
Number of successful extensions: 185
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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