Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10m18
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    26   4.2  
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.6  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.8  

>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 137 CLKTI*RERKDSVSRELIKKTTWKVVTRSL*INSKV 244
           CL+ +  ++K+  +RE  K++TW  V  SL + + V
Sbjct: 234 CLEWLKEDKKNRGTREEEKRSTWDDVQESLKVGTDV 269


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 596 GILKQNKTHLHVLNATIDEL 655
           GILK +KT L  L +TID+L
Sbjct: 39  GILKGSKTWLEELESTIDDL 58


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 407 VRAGRSHQPASRCTAGMSLDTSQNT 333
           VR  ++HQP    T G+SLD++  T
Sbjct: 176 VRLSKAHQPLRIPTTGVSLDSADLT 200


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 515  RPSAGKTNDSYGSIFPGLSTVLSAPGELSAV 423
            RPSA +  DS+GS+  G S V S   E S +
Sbjct: 1397 RPSAPERRDSFGSVSSG-SNVSSIEDETSTM 1426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,382
Number of Sequences: 5004
Number of extensions: 46963
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)