Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10m18
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0368 - 33418918-33419031,33419132-33419530,33419680-334198...    32   0.36 
10_07_0132 + 13263577-13263732,13265391-13265456,13265607-132657...    30   1.9  
03_04_0183 + 18202102-18202178,18202786-18202861,18203361-182034...    29   3.3  
09_04_0187 - 15403048-15403237,15403808-15403959,15404052-154042...    29   4.4  
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407...    28   7.7  

>03_06_0368 -
           33418918-33419031,33419132-33419530,33419680-33419805,
           33419880-33420096,33420178-33420272,33420840-33421060,
           33421149-33421222,33421362-33421484,33421814-33421854,
           33421933-33422134,33422245-33422504,33422669-33422798,
           33423037-33423317
          Length = 760

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -2

Query: 455 VLSAPGELSAVEVALWVRAGRSHQPASRCTAGMSLDTSQNTIVIDQLKHDKFFAFS 288
           VLS  GE S ++  LW+ +  S++P   C  G  L +S   I    L+   F AFS
Sbjct: 477 VLSTTGEASDIDDDLWLSSRASYKPIIECCGGTELASSY--IQGSLLRSQAFGAFS 530


>10_07_0132 +
           13263577-13263732,13265391-13265456,13265607-13265705,
           13267020-13267084,13267210-13267294,13267389-13267422,
           13267539-13267642,13268085-13268408,13269090-13269605
          Length = 482

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = -2

Query: 533 ALGSCRRPSAGKTNDSYGSIFPGLSTVLSAPGELSAVEVAL 411
           ALG+    S+G TND + S+F GLST ++    + A EVAL
Sbjct: 185 ALGNILGYSSGSTNDWHKSVFLGLSTAVTM---VFAREVAL 222


>03_04_0183 +
           18202102-18202178,18202786-18202861,18203361-18203413,
           18203535-18204025,18204303-18204463,18205845-18206045,
           18206160-18206747
          Length = 548

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = -2

Query: 515 RPSAGKTNDSYGSIFPGLSTVLSAPGELSAVEVALWVRAGRSHQPASRCTAGMSLDTSQN 336
           R   GK     G IF GL   + A GELS  + + W R+ +    A       + D S N
Sbjct: 159 RAREGKRPLLSGDIFVGLIKGIGAVGELSFTDNSSWTRSRKFRLGAK------TEDGSYN 212

Query: 335 TIVIDQLKHDKFFAFSHK 282
            + + + K + F    H+
Sbjct: 213 GVRVREAKSESFVVKDHR 230


>09_04_0187 -
           15403048-15403237,15403808-15403959,15404052-15404210,
           15404422-15404562
          Length = 213

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -2

Query: 464 LSTVLSAPGELSAVEVALWVRAGRSHQPASRCTAGMSLDTSQNTIVIDQLKHD 306
           + ++L A   ++ + V LW +A    QPA+  T   S D+ ++ +  + L  D
Sbjct: 149 IGSLLGAAAVIAGLYVVLWGKADDMKQPATGTTKPCSSDSRRDDVATEPLLGD 201


>03_02_0897 -
           12239375-12239458,12240035-12240116,12240213-12240714,
           12241150-12241303,12241458-12241629,12242237-12242443,
           12242926-12243323
          Length = 532

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 512 PSAGKTNDSYGSIFPGLSTVLSAPGELSAVEVALWVRAGRSHQPASRCTA 363
           PSA KT  S G+  PG+  VL     L A    +++ +GR  +  + CT+
Sbjct: 137 PSAFKTWASKGAC-PGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTS 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,193,529
Number of Sequences: 37544
Number of extensions: 290767
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)