Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10m18
         (666 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL159974-1|CAI12921.2| 1008|Homo sapiens RNA binding motif prote...    31   3.7  
AL139006-1|CAI95136.1| 1008|Homo sapiens RNA binding motif prote...    31   3.7  

>AL159974-1|CAI12921.2| 1008|Homo sapiens RNA binding motif protein
           26 protein.
          Length = 1008

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 554 CCDMDTNFLKEFLPGILKQNKTHLHVLNATIDELDV 661
           CCD D + L +++  ++K++K+   +    ID+LDV
Sbjct: 25  CCDADPSALAKYVLALVKKDKSEKELKALCIDQLDV 60


>AL139006-1|CAI95136.1| 1008|Homo sapiens RNA binding motif protein
           26 protein.
          Length = 1008

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 554 CCDMDTNFLKEFLPGILKQNKTHLHVLNATIDELDV 661
           CCD D + L +++  ++K++K+   +    ID+LDV
Sbjct: 25  CCDADPSALAKYVLALVKKDKSEKELKALCIDQLDV 60


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,589,251
Number of Sequences: 237096
Number of extensions: 1567964
Number of successful extensions: 3446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3446
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)