Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10m16
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    73   4e-14
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    29   0.90 
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         28   1.6  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    27   2.7  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    26   6.3  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   8.4  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   8.4  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   8.4  

>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 1/186 (0%)
 Frame = +1

Query: 100 LKMNRDKRDPDFPVELESQFLLRLPE-EPAKALREALQTGENFKNRLTIQMDNDMRNGEV 276
           L  + +  D +    +E Q +LRLP  E  + +R+A++  E  +         D R   V
Sbjct: 57  LGYDSEASDREEDTYIEEQIILRLPPGEDCEYVRKAIENREVGRGADIWVKFKDQRRAVV 116

Query: 277 RLDHWLLHGKVYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPAXXXX 456
            ++  L   K+ DLP I+ES K+ D+K ++K ADICQ++I  + I+  ++          
Sbjct: 117 HVNGHLYAAKLVDLPCIIESNKSFDKKVIFKAADICQMLIATERIEHENS---------V 167

Query: 457 XXXXXXXXXXLWPHGITPPTKNVXXXXXXXXXXXXCVEAPEIEKEVKRLLRADNEAVSFT 636
                     ++PHG+T P   V             +EA  +E EV RLL  D  A S +
Sbjct: 168 LNTQLKQADYIYPHGLTTPMHWVRQKRFRKRVSNRTIEA--VENEVDRLLAMDERAESTS 225

Query: 637 WEVIQE 654
            E+I +
Sbjct: 226 NELIDQ 231


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 261 EKWRSTIRSLVTSWESIRLTNY 326
           E+W+S  RSL   W SI   NY
Sbjct: 489 EEWKSVKRSLQPGWRSIEFKNY 510


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 574 PEIEKEVKRLLRADNEAVSFTWEVIQEEDDHSSKPETVNITKNGE 708
           P + +E    LR + +  S  WE++QE   H+++ + +   K+ E
Sbjct: 69  PIVGEEDSDFLRENTQTCSRVWELVQETIQHATEYKELGQIKSAE 113


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 583 EKEVKRLLRADNEAVSFTWEVIQEEDDHSSKPETVNITKNGES 711
           E ++KRL ++DN     T  +I+   ++S+KP  +    +GE+
Sbjct: 117 ENQIKRLPQSDNTT---TERIIENNPNYSNKPSKLKRALSGEN 156


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 160 EIEILTQLEN-QDLFCLYSFSVIN*INLNNECFELQMLQ*QCNA 32
           EI++L    N +++ C+Y   +IN  N N      ++++   NA
Sbjct: 70  EIKLLIHFRNHRNITCIYDLDIINPYNFNEVYIYEELMEADLNA 113


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 577 EIEKEVKRLLRADNEAVSFTWEVIQEEDDHSSKPETVNITKNGESKN 717
           E E E K    A+ EAV   WE   EE + +   E V   K  + K+
Sbjct: 400 ETEVERKEENEAEAEAVFDDWEAALEEPEVAENNEVVTEKKETDIKS 446


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 693 NIDCFWFRRMIILLLNHFPCKT 628
           NI  FW  R+  LLLN FP KT
Sbjct: 836 NIMPFWLGRL--LLLNEFPSKT 855


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
 Frame = +1

Query: 565 VEAPEIEKEVKR------LLRADNEAVSFTWEVIQEEDDHSSKPETVNITKN-GESKNXE 723
           +  PE   E+KR      +  ADN   SFT ++   E   +   E   + KN  E+K+  
Sbjct: 31  IPEPETLSEMKRHPLYSNIFNADNNTTSFTEQIETSETSKTQDSEGNKVDKNLKENKSIR 90

Query: 724 R 726
           R
Sbjct: 91  R 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,089
Number of Sequences: 5004
Number of extensions: 41521
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)