Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10m16
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098...    47   2e-05
01_06_0067 + 26157657-26157723,26158710-26158843,26158921-26159160     44   9e-05
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788...    31   1.2  
12_02_0515 - 19920411-19921694                                         30   1.6  
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530     29   5.0  
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236...    28   6.6  
12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522...    28   8.7  
10_01_0238 + 2496974-2497618,2497738-2497980,2498202-2499211,249...    28   8.7  

>05_03_0614 -
           16206005-16206586,16207585-16207608,16209746-16209879,
           16210703-16210832
          Length = 289

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
 Frame = +1

Query: 145 LESQFLLRLPEEPAKALRE------ALQTGENFKNR-LTIQMDNDMRNGEVRLDHWLLHG 303
           +E QF+LR+P   A+ +        A  +  N ++  L +    D RNG   + +     
Sbjct: 1   MEEQFILRVPPSVAERIERLMNESAAASSSSNPEDASLDLSFSEDGRNGTFMIGNESFPA 60

Query: 304 KVYDLPTIVESLKTIDRKSVYKTADICQ 387
            + DLPT+VES KT D   + KTADI Q
Sbjct: 61  SLLDLPTVVESYKTYDDSVLIKTADIGQ 88


>01_06_0067 + 26157657-26157723,26158710-26158843,26158921-26159160
          Length = 146

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 21/62 (33%), Positives = 36/62 (58%)
 Frame = +1

Query: 235 LTIQMDNDMRNGEVRLDHWLLHGKVYDLPTIVESLKTIDRKSVYKTADICQIMICKDEID 414
           L +    D R+G   + +      + DLPT++ES KT +   + KTADI Q+++ ++E D
Sbjct: 17  LDLSFSEDGRSGTFMIGNESFPASLLDLPTVMESYKTYNDSVLIKTADIGQMIMVREEDD 76

Query: 415 PS 420
           P+
Sbjct: 77  PA 78


>09_06_0048 + 20477076-20478547,20478643-20478722,20478880-20478893,
            20480164-20481199,20481275-20481402,20481673-20481732,
            20481774-20481878,20481971-20482055,20482315-20482470,
            20482562-20482831,20482877-20483671,20483844-20483903,
            20484062-20485134
          Length = 1777

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/82 (29%), Positives = 44/82 (53%)
 Frame = +1

Query: 106  MNRDKRDPDFPVELESQFLLRLPEEPAKALREALQTGENFKNRLTIQMDNDMRNGEVRLD 285
            +N DKR+    +++ S       EE  K LR++++ G  F  RLT+   + M    + L+
Sbjct: 890  LNLDKREV-ITIDITSN--QEFTEEECKRLRQSIKCG--FIPRLTVFFWH-MCTVSLFLN 943

Query: 286  HWLLHGKVYDLPTIVESLKTID 351
            +  + G+VY+   +++SLK  D
Sbjct: 944  YLTIQGEVYEKAKVLQSLKVND 965


>12_02_0515 - 19920411-19921694
          Length = 427

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 451 CFLLEILLRWTMGRFH 404
           CF++E+L+RW MGR +
Sbjct: 101 CFIIELLIRWNMGRLN 116


>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
          Length = 519

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 169 LPEEPAKALREALQTGENFKNRLTIQMDNDMRNGE 273
           + +E  K L E L   E    RLT+++DN +R G+
Sbjct: 413 ISDEDKKGLSEKLSQMERELERLTVELDNKVRFGQ 447


>04_03_0983 +
           21423086-21423280,21423330-21423404,21423531-21423632,
           21423721-21423774,21423880-21423972,21424526-21424618,
           21427329-21427433,21427517-21427615,21427701-21427997,
           21428512-21428622
          Length = 407

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 568 EAPEIEKEVKRLLRADNEAVSFTWEVIQEEDDHSSKPE 681
           E  +I +E +   R+      F W+   E++D+S KPE
Sbjct: 318 EIMKIVEEARTPPRSSTPVAGFGWQEEDEQEDNSKKPE 355


>12_02_1096 +
           26050224-26051058,26051599-26051831,26051940-26052230,
           26052860-26052988,26053082-26053255,26053334-26053547,
           26053881-26053968,26054195-26054239,26056969-26057015,
           26057441-26057727,26057812-26058051,26058141-26058257
          Length = 899

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -2

Query: 322 LVSRILSHEVTNDLIVLLH---FSYHYPFVLSTC 230
           +VSR  +H +   LI+ LH   FS H P +LS C
Sbjct: 580 IVSRHANHSLRVRLILKLHCTHFSLHIPLMLSDC 613


>10_01_0238 +
           2496974-2497618,2497738-2497980,2498202-2499211,
           2499329-2499370,2499465-2499492
          Length = 655

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 183 GQSSQRSLTNRRKFQKQVDNTNG**YEKWRSTIRSLVTSWESIRLTNYC 329
           G+ S   +  R      V N     +EKW  T+   +T W+ +   N+C
Sbjct: 389 GERSLLDMNTRHFIALGVANAIACLHEKWLDTLNGSITPWDILLDGNFC 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,244,465
Number of Sequences: 37544
Number of extensions: 222640
Number of successful extensions: 637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)