Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10m16
         (728 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   5.5  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   7.3  
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    23   9.7  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    23   9.7  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 586 KEVKRLLRADNEAVSFTWEVIQEEDDHSSKPETVNITKNGES 711
           KE K  +RADN+ +    + + ++ D   KPE ++I ++ E+
Sbjct: 368 KEAK--IRADNDLLMGRRQELNQKIDTELKPEMMSIERSIET 407


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 100 LKMNRDKRDPDFPVELESQFLLRLPEEPAKALREALQTGE 219
           L +NR   DPD P   ++Q+  R       A++  +  G+
Sbjct: 528 LILNRHLEDPDSPQLSDAQYGFRRGRSTISAIQSLVDAGK 567


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 397 KSLFDKCLRFCKHFFCQ 347
           +S  D  +  CKH+FC+
Sbjct: 252 ESFVDPIVTKCKHYFCE 268


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 397 KSLFDKCLRFCKHFFCQ 347
           +S  D  +  CKH+FC+
Sbjct: 252 ESFVDPIVTKCKHYFCE 268


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,792
Number of Sequences: 2352
Number of extensions: 10093
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)