Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10m16
(728 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X97999-1|CAA66636.1| 349|Homo sapiens transcription factor IID ... 154 3e-37
BC032737-1|AAH32737.1| 349|Homo sapiens TAF7 RNA polymerase II,... 154 3e-37
AF349038-1|AAK30585.1| 349|Homo sapiens TFIID subunit TAFII55 p... 154 3e-37
U18062-1|AAB60347.1| 349|Homo sapiens TFIID subunit TAFII55 pro... 152 1e-36
Z68331-4|CAI42017.1| 462|Homo sapiens TAF7-like RNA polymerase ... 113 5e-25
Z68331-2|CAI42014.1| 302|Homo sapiens TAF7-like RNA polymerase ... 113 5e-25
Z68331-1|CAI42015.1| 376|Homo sapiens TAF7-like RNA polymerase ... 113 5e-25
BC043391-1|AAH43391.1| 462|Homo sapiens TAF7-like RNA polymeras... 113 5e-25
AL109801-3|CAI43036.1| 462|Homo sapiens TAF7-like RNA polymeras... 113 5e-25
AL109801-2|CAI43034.1| 302|Homo sapiens TAF7-like RNA polymeras... 113 5e-25
AL109801-1|CAI43035.1| 376|Homo sapiens TAF7-like RNA polymeras... 113 5e-25
AK026810-1|BAB15560.1| 302|Homo sapiens protein ( Homo sapiens ... 113 5e-25
AF285595-1|AAK31974.1| 374|Homo sapiens TBP-associated factor I... 113 5e-25
>X97999-1|CAA66636.1| 349|Homo sapiens transcription factor IID
protein.
Length = 349
Score = 154 bits (374), Expect = 3e-37
Identities = 87/203 (42%), Positives = 119/203 (58%), Gaps = 5/203 (2%)
Frame = +1
Query: 118 KRDPDFPVELESQFLLRLPEEPAKALREALQTGE-NFKNRLTIQMDNDMRNGEVRLDHWL 294
K D P ELESQF+LRLP E A +R A+Q+G N K+RLTI++ D R+G VR+D
Sbjct: 3 KSKDDAPHELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELHPDGRHGIVRVDRVP 62
Query: 295 LHGKVYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPA----XXXXXX 462
L K+ DLP ++ESLKTID+K+ YKTADICQ+++ + D EE A
Sbjct: 63 LASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKK 122
Query: 463 XXXXXXXXLWPHGITPPTKNVXXXXXXXXXXXXCVEAPEIEKEVKRLLRADNEAVSFTWE 642
+W HGIT P KNV +E+P++EKEVKRLL D EAVS WE
Sbjct: 123 DKDKEKKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWE 182
Query: 643 VIQEEDDHSSKPETVNITKNGES 711
+I E++ ++ + ++I+ G S
Sbjct: 183 IIAEDETKEAENQGLDISSPGMS 205
>BC032737-1|AAH32737.1| 349|Homo sapiens TAF7 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 55kDa
protein.
Length = 349
Score = 154 bits (374), Expect = 3e-37
Identities = 87/203 (42%), Positives = 119/203 (58%), Gaps = 5/203 (2%)
Frame = +1
Query: 118 KRDPDFPVELESQFLLRLPEEPAKALREALQTGE-NFKNRLTIQMDNDMRNGEVRLDHWL 294
K D P ELESQF+LRLP E A +R A+Q+G N K+RLTI++ D R+G VR+D
Sbjct: 3 KSKDDAPHELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELHPDGRHGIVRVDRVP 62
Query: 295 LHGKVYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPA----XXXXXX 462
L K+ DLP ++ESLKTID+K+ YKTADICQ+++ + D EE A
Sbjct: 63 LASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKK 122
Query: 463 XXXXXXXXLWPHGITPPTKNVXXXXXXXXXXXXCVEAPEIEKEVKRLLRADNEAVSFTWE 642
+W HGIT P KNV +E+P++EKEVKRLL D EAVS WE
Sbjct: 123 DKDKEKKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWE 182
Query: 643 VIQEEDDHSSKPETVNITKNGES 711
+I E++ ++ + ++I+ G S
Sbjct: 183 IIAEDETKEAENQGLDISSPGMS 205
>AF349038-1|AAK30585.1| 349|Homo sapiens TFIID subunit TAFII55
protein.
Length = 349
Score = 154 bits (374), Expect = 3e-37
Identities = 87/203 (42%), Positives = 119/203 (58%), Gaps = 5/203 (2%)
Frame = +1
Query: 118 KRDPDFPVELESQFLLRLPEEPAKALREALQTGE-NFKNRLTIQMDNDMRNGEVRLDHWL 294
K D P ELESQF+LRLP E A +R A+Q+G N K+RLTI++ D R+G VR+D
Sbjct: 3 KSKDDAPHELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELHPDGRHGIVRVDRVP 62
Query: 295 LHGKVYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPA----XXXXXX 462
L K+ DLP ++ESLKTID+K+ YKTADICQ+++ + D EE A
Sbjct: 63 LASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKK 122
Query: 463 XXXXXXXXLWPHGITPPTKNVXXXXXXXXXXXXCVEAPEIEKEVKRLLRADNEAVSFTWE 642
+W HGIT P KNV +E+P++EKEVKRLL D EAVS WE
Sbjct: 123 DKDKEKKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWE 182
Query: 643 VIQEEDDHSSKPETVNITKNGES 711
+I E++ ++ + ++I+ G S
Sbjct: 183 IIAEDETKEAENQGLDISSPGMS 205
>U18062-1|AAB60347.1| 349|Homo sapiens TFIID subunit TAFII55
protein.
Length = 349
Score = 152 bits (369), Expect = 1e-36
Identities = 86/203 (42%), Positives = 118/203 (58%), Gaps = 5/203 (2%)
Frame = +1
Query: 118 KRDPDFPVELESQFLLRLPEEPAKALREALQTGE-NFKNRLTIQMDNDMRNGEVRLDHWL 294
K D P ELESQF+LRLP E A +R A+Q+G N K+RLTI++ D R+G VR+D
Sbjct: 3 KSKDDAPHELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELHPDGRHGIVRVDRVP 62
Query: 295 LHGKVYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPA----XXXXXX 462
L K+ DLP ++ESLKTID+K+ YKTADICQ+++ + D EE A
Sbjct: 63 LASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKK 122
Query: 463 XXXXXXXXLWPHGITPPTKNVXXXXXXXXXXXXCVEAPEIEKEVKRLLRADNEAVSFTWE 642
+W HGIT P KNV +E+P++EKEVKRLL D EAV WE
Sbjct: 123 DKDKEKKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVRTRWE 182
Query: 643 VIQEEDDHSSKPETVNITKNGES 711
+I E++ ++ + ++I+ G S
Sbjct: 183 IIAEDETKEAENQGLDISSPGMS 205
>Z68331-4|CAI42017.1| 462|Homo sapiens TAF7-like RNA polymerase II,
TATA box binding protein (TBP)-associated factor,
protein.
Length = 462
Score = 113 bits (273), Expect = 5e-25
Identities = 72/194 (37%), Positives = 102/194 (52%), Gaps = 18/194 (9%)
Frame = +1
Query: 130 DFPVELESQFLLRLPEEPAKALRE-ALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGK 306
+ P E+E+QF+LRLP E A +R A K++L I + D R+ V ++ L K
Sbjct: 93 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAK 152
Query: 307 VYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPA----XXXXXXXXXX 474
+ DLP ++ESL+T+D+K+ YKTADI Q+++C + D + EE A
Sbjct: 153 LVDLPCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGR 212
Query: 475 XXXXLWPHGITPPTKNV-------------XXXXXXXXXXXXCVEAPEIEKEVKRLLRAD 615
+W HGITPP KNV +E+P++E EVKRLLR+D
Sbjct: 213 EEKCVWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSD 272
Query: 616 NEAVSFTWEVIQEE 657
EAVS WEVI E+
Sbjct: 273 AEAVSTRWEVIAED 286
>Z68331-2|CAI42014.1| 302|Homo sapiens TAF7-like RNA polymerase II,
TATA box binding protein (TBP)-associated factor,
protein.
Length = 302
Score = 113 bits (273), Expect = 5e-25
Identities = 72/194 (37%), Positives = 102/194 (52%), Gaps = 18/194 (9%)
Frame = +1
Query: 130 DFPVELESQFLLRLPEEPAKALRE-ALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGK 306
+ P E+E+QF+LRLP E A +R A K++L I + D R+ V ++ L K
Sbjct: 7 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAK 66
Query: 307 VYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPA----XXXXXXXXXX 474
+ DLP ++ESL+T+D+K+ YKTADI Q+++C + D + EE A
Sbjct: 67 LVDLPCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGR 126
Query: 475 XXXXLWPHGITPPTKNV-------------XXXXXXXXXXXXCVEAPEIEKEVKRLLRAD 615
+W HGITPP KNV +E+P++E EVKRLLR+D
Sbjct: 127 EEKCVWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSD 186
Query: 616 NEAVSFTWEVIQEE 657
EAVS WEVI E+
Sbjct: 187 AEAVSTRWEVIAED 200
>Z68331-1|CAI42015.1| 376|Homo sapiens TAF7-like RNA polymerase II,
TATA box binding protein (TBP)-associated factor,
protein.
Length = 376
Score = 113 bits (273), Expect = 5e-25
Identities = 72/194 (37%), Positives = 102/194 (52%), Gaps = 18/194 (9%)
Frame = +1
Query: 130 DFPVELESQFLLRLPEEPAKALRE-ALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGK 306
+ P E+E+QF+LRLP E A +R A K++L I + D R+ V ++ L K
Sbjct: 7 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAK 66
Query: 307 VYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPA----XXXXXXXXXX 474
+ DLP ++ESL+T+D+K+ YKTADI Q+++C + D + EE A
Sbjct: 67 LVDLPCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGR 126
Query: 475 XXXXLWPHGITPPTKNV-------------XXXXXXXXXXXXCVEAPEIEKEVKRLLRAD 615
+W HGITPP KNV +E+P++E EVKRLLR+D
Sbjct: 127 EEKCVWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSD 186
Query: 616 NEAVSFTWEVIQEE 657
EAVS WEVI E+
Sbjct: 187 AEAVSTRWEVIAED 200
>BC043391-1|AAH43391.1| 462|Homo sapiens TAF7-like RNA polymerase
II, TATA box binding protein (TBP)-associated factor,
protein.
Length = 462
Score = 113 bits (273), Expect = 5e-25
Identities = 72/194 (37%), Positives = 102/194 (52%), Gaps = 18/194 (9%)
Frame = +1
Query: 130 DFPVELESQFLLRLPEEPAKALRE-ALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGK 306
+ P E+E+QF+LRLP E A +R A K++L I + D R+ V ++ L K
Sbjct: 93 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAK 152
Query: 307 VYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPA----XXXXXXXXXX 474
+ DLP ++ESL+T+D+K+ YKTADI Q+++C + D + EE A
Sbjct: 153 LVDLPCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGR 212
Query: 475 XXXXLWPHGITPPTKNV-------------XXXXXXXXXXXXCVEAPEIEKEVKRLLRAD 615
+W HGITPP KNV +E+P++E EVKRLLR+D
Sbjct: 213 EEKCVWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSD 272
Query: 616 NEAVSFTWEVIQEE 657
EAVS WEVI E+
Sbjct: 273 AEAVSTRWEVIAED 286
>AL109801-3|CAI43036.1| 462|Homo sapiens TAF7-like RNA polymerase
II, TATA box binding protein (TBP)-associated factor,
protein.
Length = 462
Score = 113 bits (273), Expect = 5e-25
Identities = 72/194 (37%), Positives = 102/194 (52%), Gaps = 18/194 (9%)
Frame = +1
Query: 130 DFPVELESQFLLRLPEEPAKALRE-ALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGK 306
+ P E+E+QF+LRLP E A +R A K++L I + D R+ V ++ L K
Sbjct: 93 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAK 152
Query: 307 VYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPA----XXXXXXXXXX 474
+ DLP ++ESL+T+D+K+ YKTADI Q+++C + D + EE A
Sbjct: 153 LVDLPCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGR 212
Query: 475 XXXXLWPHGITPPTKNV-------------XXXXXXXXXXXXCVEAPEIEKEVKRLLRAD 615
+W HGITPP KNV +E+P++E EVKRLLR+D
Sbjct: 213 EEKCVWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSD 272
Query: 616 NEAVSFTWEVIQEE 657
EAVS WEVI E+
Sbjct: 273 AEAVSTRWEVIAED 286
>AL109801-2|CAI43034.1| 302|Homo sapiens TAF7-like RNA polymerase
II, TATA box binding protein (TBP)-associated factor,
protein.
Length = 302
Score = 113 bits (273), Expect = 5e-25
Identities = 72/194 (37%), Positives = 102/194 (52%), Gaps = 18/194 (9%)
Frame = +1
Query: 130 DFPVELESQFLLRLPEEPAKALRE-ALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGK 306
+ P E+E+QF+LRLP E A +R A K++L I + D R+ V ++ L K
Sbjct: 7 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAK 66
Query: 307 VYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPA----XXXXXXXXXX 474
+ DLP ++ESL+T+D+K+ YKTADI Q+++C + D + EE A
Sbjct: 67 LVDLPCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGR 126
Query: 475 XXXXLWPHGITPPTKNV-------------XXXXXXXXXXXXCVEAPEIEKEVKRLLRAD 615
+W HGITPP KNV +E+P++E EVKRLLR+D
Sbjct: 127 EEKCVWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSD 186
Query: 616 NEAVSFTWEVIQEE 657
EAVS WEVI E+
Sbjct: 187 AEAVSTRWEVIAED 200
>AL109801-1|CAI43035.1| 376|Homo sapiens TAF7-like RNA polymerase
II, TATA box binding protein (TBP)-associated factor,
protein.
Length = 376
Score = 113 bits (273), Expect = 5e-25
Identities = 72/194 (37%), Positives = 102/194 (52%), Gaps = 18/194 (9%)
Frame = +1
Query: 130 DFPVELESQFLLRLPEEPAKALRE-ALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGK 306
+ P E+E+QF+LRLP E A +R A K++L I + D R+ V ++ L K
Sbjct: 7 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAK 66
Query: 307 VYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPA----XXXXXXXXXX 474
+ DLP ++ESL+T+D+K+ YKTADI Q+++C + D + EE A
Sbjct: 67 LVDLPCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGR 126
Query: 475 XXXXLWPHGITPPTKNV-------------XXXXXXXXXXXXCVEAPEIEKEVKRLLRAD 615
+W HGITPP KNV +E+P++E EVKRLLR+D
Sbjct: 127 EEKCVWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSD 186
Query: 616 NEAVSFTWEVIQEE 657
EAVS WEVI E+
Sbjct: 187 AEAVSTRWEVIAED 200
>AK026810-1|BAB15560.1| 302|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23157 fis, clone LNG09620. ).
Length = 302
Score = 113 bits (273), Expect = 5e-25
Identities = 72/194 (37%), Positives = 102/194 (52%), Gaps = 18/194 (9%)
Frame = +1
Query: 130 DFPVELESQFLLRLPEEPAKALRE-ALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGK 306
+ P E+E+QF+LRLP E A +R A K++L I + D R+ V ++ L K
Sbjct: 7 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAK 66
Query: 307 VYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPA----XXXXXXXXXX 474
+ DLP ++ESL+T+D+K+ YKTADI Q+++C + D + EE A
Sbjct: 67 LVDLPCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGR 126
Query: 475 XXXXLWPHGITPPTKNV-------------XXXXXXXXXXXXCVEAPEIEKEVKRLLRAD 615
+W HGITPP KNV +E+P++E EVKRLLR+D
Sbjct: 127 EEKCVWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSD 186
Query: 616 NEAVSFTWEVIQEE 657
EAVS WEVI E+
Sbjct: 187 AEAVSTRWEVIAED 200
>AF285595-1|AAK31974.1| 374|Homo sapiens TBP-associated factor II Q
protein.
Length = 374
Score = 113 bits (273), Expect = 5e-25
Identities = 72/194 (37%), Positives = 102/194 (52%), Gaps = 18/194 (9%)
Frame = +1
Query: 130 DFPVELESQFLLRLPEEPAKALRE-ALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGK 306
+ P E+E+QF+LRLP E A +R A K++L I + D R+ V ++ L K
Sbjct: 7 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAK 66
Query: 307 VYDLPTIVESLKTIDRKSVYKTADICQIMICKDEIDPSSTEEESPA----XXXXXXXXXX 474
+ DLP ++ESL+T+D+K+ YKTADI Q+++C + D + EE A
Sbjct: 67 LVDLPCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGR 126
Query: 475 XXXXLWPHGITPPTKNV-------------XXXXXXXXXXXXCVEAPEIEKEVKRLLRAD 615
+W HGITPP KNV +E+P++E EVKRLLR+D
Sbjct: 127 EEKCVWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSD 186
Query: 616 NEAVSFTWEVIQEE 657
EAVS WEVI E+
Sbjct: 187 AEAVSTRWEVIAED 200
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,577,194
Number of Sequences: 237096
Number of extensions: 1320966
Number of successful extensions: 2771
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2745
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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