Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10m16
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-12|CAC35845.1|  236|Caenorhabditis elegans Hypothetical...   126   2e-29
Z67755-1|CAA91754.1|  254|Caenorhabditis elegans Hypothetical pr...    82   5e-16

>AL132904-12|CAC35845.1|  236|Caenorhabditis elegans Hypothetical
           protein Y111B2A.16 protein.
          Length = 236

 Score =  126 bits (303), Expect = 2e-29
 Identities = 65/175 (37%), Positives = 101/175 (57%), Gaps = 1/175 (0%)
 Frame = +1

Query: 130 DFPVELESQFLLRLPEEPAKALREALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGKV 309
           D P + ES  +LR+PE+    + + +Q+ +      ++ +++D RN  VR+ + LL+GK+
Sbjct: 30  DDPPDFESHIVLRVPEDCVGRIEKIIQS-DGKHEEFSLNLNSDARNSTVRIGNQLLNGKI 88

Query: 310 YDLPTIVESLKTIDRKSVYKTADICQIMIC-KDEIDPSSTEEESPAXXXXXXXXXXXXXX 486
            DLPTI E  KT+D KS+YK AD+ QI++C  D I+  ++  E  A              
Sbjct: 89  LDLPTITEIHKTLDNKSLYKVADVSQILVCTHDSINSIASSSEDAAQKAAAAKAKQWQ-- 146

Query: 487 LWPHGITPPTKNVXXXXXXXXXXXXCVEAPEIEKEVKRLLRADNEAVSFTWEVIQ 651
            +PHG+TPP K+              ++APE+EKE+KRLLRAD EA S  WE+++
Sbjct: 147 -YPHGLTPPMKSARKKRFRKTKKKKFMDAPEVEKELKRLLRADLEADSVKWEIVE 200


>Z67755-1|CAA91754.1|  254|Caenorhabditis elegans Hypothetical
           protein F54F7.1 protein.
          Length = 254

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 26/221 (11%)
 Frame = +1

Query: 142 ELESQFLLRLPEEPAKALREALQTGENFKNRLTIQMDNDMRNGEVRLDHWLLHGKVYDLP 321
           E E   +LR+P +    + +A+  GE     L I    D R  ++RL + +L  K+ DLP
Sbjct: 22  EWEEHLILRVPPDVVNRMEKAVN-GEIDAEELGINFQEDNRTVQIRLGNQILPAKILDLP 80

Query: 322 TIVESLKTIDRKSVYKTAD-----ICQ--IMICKDE---IDPSSTEEESP---------- 441
           TI E  KT+D  ++YK  D     IC+  + I K E   ++P   E   P          
Sbjct: 81  TINEVHKTLDNSTLYKVTDVSQMIICEGAMPIPKAERKKLNPEGIENREPKIEVEGSGVE 140

Query: 442 ------AXXXXXXXXXXXXXXLWPHGITPPTKNVXXXXXXXXXXXXCVEAPEIEKEVKRL 603
                 +               +PHGITPP KN              +   EIE E+KRL
Sbjct: 141 NKTNVQSKTARQLAKEKVKEYHYPHGITPPMKNAKKRRFRKKKEKKTMAVEEIEIELKRL 200

Query: 604 LRADNEAVSFTWEVIQEEDDHSSKPETVNITKNGESKNXER 726
           LR+D EA S  W+V+ ++D+ + + E + +  N +  + ++
Sbjct: 201 LRSDLEAQSVRWKVV-DDDETNPEDEDIEVYDNDDGSDLDK 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,375,164
Number of Sequences: 27780
Number of extensions: 232231
Number of successful extensions: 739
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)