Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10m09
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...   163   2e-41
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...   158   6e-40
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    28   1.2  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.5  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   2.0  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    27   2.7  
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...    27   2.7  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    26   6.2  
SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    26   6.2  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.2  
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         25   8.2  

>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score =  163 bits (396), Expect = 2e-41
 Identities = 83/209 (39%), Positives = 123/209 (58%)
 Frame = +3

Query: 81  RFVEPQKAVKSITDMTIWEKSEAYMEYTGFVATLNESIKGKPLTVDCKVSDNVKKIINML 260
           +F  P+K +   +DMT + +S+AY     F+  LN +  G       + S  V+K++ +L
Sbjct: 22  QFKTPEKLIVEASDMTAFRQSKAYYRIFDFLQRLNIASVGVN-DYHVEYSTRVEKLVRIL 80

Query: 261 DKIDRIIDEFPPVEQPQRFGNAAFREWFENVKTNSTQLLQEALQPELHLAIPEIKVYLQE 440
            ++  I    PP     RFGN AFR W E ++ +++Q++   +   L  A  E+  Y   
Sbjct: 81  CRVKEITKTVPPASGRHRFGNPAFRIWHEKLRDSASQIMDIIIPDSLSKAKVELLDYFLG 140

Query: 441 SFGNATRIDYGTGHEMAFVMFLCCLYKIGFLQLEDNVATVLIIFNKYLNIARRLQKTYRM 620
           SFGN+ RID+GTGHE+ F+ F+  L  +G L   D  A  L I + YL + R L +TYR+
Sbjct: 141 SFGNSQRIDFGTGHELNFLGFIKGLDLLGLLDAADYKAIALYITHVYLEVCRELVQTYRL 200

Query: 621 EPAGSHGVWSLDDYQFIPFIWGSSQLIDQ 707
           EPAGSHGVW LDD+ FIP+I+GS+QL D+
Sbjct: 201 EPAGSHGVWGLDDHFFIPYIFGSAQLADK 229


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score =  158 bits (384), Expect = 6e-40
 Identities = 77/210 (36%), Positives = 126/210 (60%), Gaps = 1/210 (0%)
 Frame = +3

Query: 78  HRFVEPQKAVKSITDMTIWEKSEAYMEYTGFVATLNESIKGKPLTVDCKVSDNVKKIINM 257
           +R   P + +    D+ ++++ +AY     F+  L+E++K KP++     S +++ ++N+
Sbjct: 8   NRCFVPVRRILDNEDLKLFKEGDAYKLIDSFICDLDEAVKDKPISASIPQSSSIEHVLNI 67

Query: 258 LDKIDRIIDEFPPVEQP-QRFGNAAFREWFENVKTNSTQLLQEALQPELHLAIPEIKVYL 434
           LD++  I  E P ++    RFGN AF+ +++ V    T  L +    E H A  E   Y 
Sbjct: 68  LDRVGEIKQENPAIDNMGSRFGNPAFQSFYDQVYIE-TPKLHQVFGIE-HNAAMEAGRYF 125

Query: 435 QESFGNATRIDYGTGHEMAFVMFLCCLYKIGFLQLEDNVATVLIIFNKYLNIARRLQKTY 614
            ESFGN  RIDYG+GHE+ F+ +L  L ++G     D  A V+ +F KY+ + R LQ  Y
Sbjct: 126 YESFGNRKRIDYGSGHELYFMSWLLILKQLGIFTKNDYPALVVRVFVKYVELMRSLQIFY 185

Query: 615 RMEPAGSHGVWSLDDYQFIPFIWGSSQLID 704
            +EPAGSHGVW LDD+ F+PF++G++QL++
Sbjct: 186 TLEPAGSHGVWGLDDFHFLPFLFGAAQLVN 215


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +1

Query: 283 MSSLQWNNLKDLVMLHSENGLKM*RQIPHSYFKKHYSQNYIW 408
           +S + WNN  +++   +E    +  ++P   F+K + + Y W
Sbjct: 167 LSFISWNNFLEIIF--AEGKFSIEEEVPQLDFEKEFPRTYSW 206


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/64 (20%), Positives = 33/64 (51%)
 Frame = +3

Query: 129  IWEKSEAYMEYTGFVATLNESIKGKPLTVDCKVSDNVKKIINMLDKIDRIIDEFPPVEQP 308
            +W  +  + +Y  F       ++GK  T +   + N++++  +++ +D ++++FP V   
Sbjct: 1477 VWHVNPKFTQYRLF------DVRGKERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFT 1530

Query: 309  QRFG 320
             R G
Sbjct: 1531 GRIG 1534


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 336 EWFENVKTNSTQLLQEALQPELHLAIP 416
           +WF+N +  STQ L  + + EL  AIP
Sbjct: 624 DWFKNFQRYSTQKLASSFERELWEAIP 650


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 270 DRIIDEFPPVEQPQRFGNAAFREW-FENVKTNSTQLLQEALQPELHLAIPEIKVYLQES 443
           + I +   P E+P   GNA   +W FE VK + + +L     P+  +   + K  L  S
Sbjct: 291 ETINNTLKPFEEPIAEGNADIEDWTFETVKKSDSTVLGNTSIPKNSIISSQNKEELPSS 349


>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 222 KVSDNVKKIINMLDKIDRII 281
           KV+D ++ I N+LDK++R+I
Sbjct: 213 KVADKIQLIDNLLDKVNRLI 232


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 465 DYGTGHEMAFVMFLCCLYKIGFLQLEDNVATVLIIFNK 578
           D+G  + +   +F C +YKI F + + N+  +   FN+
Sbjct: 337 DHGPSYGLYLYLFFC-IYKIKFQKCDMNIVMLTKYFNE 373


>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 674 WYKLIVVQAPNTMTSSWLHSVCFLQ 600
           WY L++   PN +T  +  S  FLQ
Sbjct: 31  WYPLLIAPLPNLLTKKYSTSHDFLQ 55


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +3

Query: 96  QKAVKSITDMTIWEKSEAYMEYTGFVATLNESIKGKPLTVDCKVSDNVKKIINMLDKIDR 275
           +K +K+  D+   E S++Y E    +  L+E+   +  +         +KII    ++D+
Sbjct: 349 EKFLKACKDLE--EVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEKIIQEKSRVDK 406

Query: 276 IIDEF 290
           +IDE+
Sbjct: 407 MIDEY 411


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 54  NIHTLPPDHRFVEPQKAVKSITDMTIWEKSEAY 152
           N+  + P H  V PQ+AV  + D+T  E ++ +
Sbjct: 28  NLKPILPGHVLVIPQRAVPRLKDLTPSELTDLF 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,060
Number of Sequences: 5004
Number of extensions: 70088
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)