Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10m09
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0817 - 6185881-6187074 175 3e-44
12_01_0242 + 1812891-1812897,1814073-1814830 29 4.9
09_04_0223 - 15837275-15838279 28 6.4
09_03_0217 + 13532018-13532405,13532706-13533175 28 6.4
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91... 28 6.4
11_01_0245 + 1884361-1884400,1884549-1885282 28 8.5
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 28 8.5
01_06_1372 + 36726129-36728240 28 8.5
01_05_0112 + 18255674-18255831,18257330-18257516,18258470-18258661 28 8.5
>06_01_0817 - 6185881-6187074
Length = 397
Score = 175 bits (426), Expect = 3e-44
Identities = 90/217 (41%), Positives = 126/217 (58%), Gaps = 6/217 (2%)
Frame = +3
Query: 72 PDHRFVEPQKAVKSITDMTIWEKSEAYMEYTGFVATLNESIKGKPLT--VDCKVSDNVKK 245
P F P K + S D+ + S + GFVA L+ S+ G+ L+ + S V
Sbjct: 90 PPFAFQVPAKRITSPDDIARFHASVHGRHFLGFVAALSASVHGRKLSDPLPSPPSPVVSA 149
Query: 246 IINMLDKIDRIIDEFPPVEQPQRFGNAAFREWFENVKTNSTQLLQEAL----QPELHLAI 413
++ ++ + + PP+ R+GN AFR W E + ++ QL+ + P+L A
Sbjct: 150 LLELISALSAFVASTPPLPHNSRYGNPAFRLWHEKLSDSANQLIAPIMATAGSPDLAGAE 209
Query: 414 PEIKVYLQESFGNATRIDYGTGHEMAFVMFLCCLYKIGFLQLEDNVATVLIIFNKYLNIA 593
E+ YL +SFGNATRIDYGTGHE F FL CL ++G + D A VL +F YL++
Sbjct: 210 AELAPYLLDSFGNATRIDYGTGHETNFAAFLYCLARLGLITEADYPAVVLRVFAAYLDLM 269
Query: 594 RRLQKTYRMEPAGSHGVWSLDDYQFIPFIWGSSQLID 704
R LQ TY +EPAGSHGVW LDDY F+PFI+G++QLID
Sbjct: 270 RTLQDTYLLEPAGSHGVWGLDDYHFLPFIFGAAQLID 306
>12_01_0242 + 1812891-1812897,1814073-1814830
Length = 254
Score = 28.7 bits (61), Expect = 4.9
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Frame = +3
Query: 78 HRFVEPQKAVKSITDMTIWEKSEAYMEYTGFVATLNESIKGKPLTVDCKVSDNVKKIINM 257
HRF + ++ V ++ W+ SEA+ + A + G+P + D I+
Sbjct: 26 HRFCDNKRYVCMYKNIEQWDDSEAFDNFKNAKARFWANYHGQPSDISLPDPDMYIDKIDH 85
Query: 258 LDKID-RIIDEFPPVEQP-QRFGNAAFREWFENVKTNS--TQLLQEALQPELHLAIP-EI 422
KID +I + V P +R + + T++ Q ++ ++++ P E+
Sbjct: 86 NSKIDPELIADLKMVRLPFERDDELLPADGLGSTDTDNKCQQKQNQSGNWDIYVEKPTEV 145
Query: 423 KVYLQESFGNATRIDYGTGHE 485
+ Q+S N +D+GT HE
Sbjct: 146 NKWEQDSRSN---MDWGTKHE 163
>09_04_0223 - 15837275-15838279
Length = 334
Score = 28.3 bits (60), Expect = 6.4
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = +3
Query: 360 NSTQLLQEALQPELHLAIPEIKVYLQESFG---NATRIDYGTGHEMAFVMFLCCLYKIGF 530
+ T L AL EL P VYL F + + +G G+ +++ +
Sbjct: 194 DDTYLRVAALVDELRHK-PRDDVYLGYGFAVGDDPMQFMHGMGYVVSWDVATWVSTNEDI 252
Query: 531 LQLEDNVATVLIIFNKYLNIARRLQKTYRMEPAGSHGVWSLDDYQ 665
L+ D ++ K+LNI RR + Y + P W +D+++
Sbjct: 253 LRYNDTHGPEDLLVGKWLNIGRRGKNRYSLRPRMYDLNWDMDNFR 297
>09_03_0217 + 13532018-13532405,13532706-13533175
Length = 285
Score = 28.3 bits (60), Expect = 6.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 321 YQIFEVVPLEGTHQLFYQFYPTCL 250
Y F+++P++ H + Y F CL
Sbjct: 150 YPTFDIIPIKSAHNIVYHFAEICL 173
>05_01_0135 +
908803-909059,913133-913187,913499-914047,914140-914365,
914446-914906
Length = 515
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 298 WNNLKDLVMLHSENGLKM*RQIPHSYFKKHYSQNYIWR 411
W+ L+ V + E+ + +QI Y+ +Y Q YIWR
Sbjct: 90 WSRLQLQVHIGEESLMDRRKQIYLQYYFSYYYQYYIWR 127
>11_01_0245 + 1884361-1884400,1884549-1885282
Length = 257
Score = 27.9 bits (59), Expect = 8.5
Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Frame = +3
Query: 78 HRFVEPQKAVKSITDMTIWEKSEAYMEYTGFVATLNESIKGKPLTVDCKVSDNVKKIINM 257
HRF + ++ V ++ W+ SEA+ + A + G+P + D ++
Sbjct: 37 HRFCDNKRYVCMYKNIEQWDDSEAFDNFKNAKARFWANYHGQPSDISLPDPDMYIDKVDH 96
Query: 258 LDKID-RIIDEFPPVEQPQRFGNAAF-REWFENVKTNS--TQLLQEALQPELHLAIP-EI 422
KID +I + V P + + + T++ Q ++ ++++ P E+
Sbjct: 97 NSKIDPELIADLNMVRLPFEMDDELLPADGLGSTDTDNKCQQRQNQSRNWDIYVEKPTEV 156
Query: 423 KVYLQESFGNATRIDYGTGHE 485
+ Q+S N +D+GT HE
Sbjct: 157 NKWEQDSRSN---MDWGTKHE 174
>06_03_1130 -
27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 213 VDCKVSDNVKKIINMLDKIDRIIDEFPPVE 302
V C+ +N+K ++NML I II F +E
Sbjct: 761 VSCQAVENIKMMLNMLKYIVTIISNFMKLE 790
>01_06_1372 + 36726129-36728240
Length = 703
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 116 NGF--NSFLWLNKAMVWRKSVDVFTLFHISNSICSVGHI 6
NGF +F +A V K +DVF+ + N +C+VG +
Sbjct: 417 NGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRL 455
>01_05_0112 + 18255674-18255831,18257330-18257516,18258470-18258661
Length = 178
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = -2
Query: 193 IDSFSVATNPVYSMYASDFSQMVISVMDLTAFCGSTKRWSGGRVWMFSLFFTSPIVFAV 17
I F N V SM A + +MD+T T G +W+F++F T IVFA+
Sbjct: 35 IRGFGGLVNLVPSMKAFNCVTKQHGIMDMTYVATRTI----GFLWIFNMFVTHEIVFAL 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,816,270
Number of Sequences: 37544
Number of extensions: 396848
Number of successful extensions: 924
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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