Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10m03
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0825 + 6233525-6233740,6234274-6234461,6234544-6234668,623... 36 0.022
07_03_0651 + 20287661-20287701,20288034-20288124,20288737-202888... 29 2.6
04_04_0664 - 27066253-27067155,27067242-27067508,27067707-270683... 29 2.6
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 29 3.4
01_01_0988 - 7806113-7806193,7806275-7806499,7806589-7806709,780... 29 4.5
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 28 5.9
05_06_0117 - 25728193-25728230,25728795-25728867,25729113-257292... 28 7.8
01_05_0485 - 22628999-22629325,22630340-22630450,22630888-226310... 28 7.8
>06_01_0825 +
6233525-6233740,6234274-6234461,6234544-6234668,
6234858-6234917,6235043-6235074
Length = 206
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +1
Query: 436 SVVTDWYKGE---LSSAINKV--NNVDVSFVMYYAPWDAESQYVRGEFEKTAMVLKDRVH 600
+V WY+G+ L+ A+N + N D + V++YA W SQ R FEK A + H
Sbjct: 65 AVKFSWYRGDDAILARAVNLLHANKEDFAAVLFYASWCPFSQECRLRFEKLACIFPTIRH 124
Query: 601 FA 606
A
Sbjct: 125 LA 126
>07_03_0651 +
20287661-20287701,20288034-20288124,20288737-20288831,
20289433-20289523,20290066-20290250,20290590-20290647,
20290812-20290852,20290935-20291009,20292298-20292354,
20292480-20292546,20292754-20292900,20292986-20293210,
20293332-20293493,20293570-20293647,20293735-20293812
Length = 496
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 502 VSFVMYYAPWDAESQYVRGEFEKTAMVLKDR 594
V V +YAPW S ++ +EKTA ++++R
Sbjct: 171 VLVVNFYAPWCYWSNRLKPSWEKTAKIMRER 201
>04_04_0664 -
27066253-27067155,27067242-27067508,27067707-27068368,
27068479-27069047,27070011-27070108
Length = 832
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/101 (18%), Positives = 47/101 (46%)
Frame = +1
Query: 187 ANTEDITQVTSLSEKHSTDSDAQNSSENSQVSLQQNNRELTLNMLLKEMVFCVTLALTTY 366
A+ +++++ ++S + A + EN Q+ L + N+E + LLKE+ C + L +
Sbjct: 626 ADHQEVSRERAISADKLKEQLAASEKENKQLELARLNQEEKNSSLLKELEDCRSKLLESC 685
Query: 367 GALHNTSTKVSKHPQAYKFFGPESVVTDWYKGELSSAINKV 489
+ + K+ + SV+ +W + + ++ +
Sbjct: 686 KMVQDAVQKLGANVSLPADNSTLSVLANWVEESSTGLVDGI 726
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 499 DVSFVMYYAPWDAESQYVRGEFEKTAMVLKDRVHFAAINC 618
D+ V ++APW + + E++K A LK +V ++C
Sbjct: 184 DLWIVEFFAPWCGHCKKLAPEWKKAAKNLKGQVKLGHVDC 223
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 487 VNNVDVSFVMYYAPWDAESQYVRGEFEKTAMVLKDRVHFAAIN 615
+N+ V V ++APW Q + +EK A VLK AA++
Sbjct: 44 LNSNGVVLVEFFAPWCGHCQQLTPIWEKAAGVLKGVATVAALD 86
>01_01_0988 -
7806113-7806193,7806275-7806499,7806589-7806709,
7807065-7807256,7807884-7807947,7808135-7808261,
7808338-7808411,7808494-7808598,7808763-7808865,
7808966-7809028,7809113-7809296,7809788-7809858
Length = 469
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 352 ALTTYGALHNTSTKVSKHPQAYKFFGPESVVTDWYKGELSSAINKVNNVDVSF 510
A+ YG + + T+VS GP + +W K ++SA K+ NV F
Sbjct: 220 AILNYGYIFDNCTEVSTSESVIADDGPPQNIIEWLK--ITSACCKIRNVHSIF 270
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1
Query: 465 LPFVPVSNNRLWSKEFICLWVLG 397
L FVP N W F C W +G
Sbjct: 329 LEFVPAQNRGTWMVIFSCFWTIG 351
>05_06_0117 -
25728193-25728230,25728795-25728867,25729113-25729242,
25729368-25729439,25730114-25730152,25730340-25730408,
25730504-25730634,25732784-25732890,25734194-25734289,
25734762-25734903
Length = 298
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +1
Query: 433 ESVVTDWYKGELSSAINKVNNVDVSFVMYYAPWDAESQYVRGEFEKTAMVLKDRVHFAAI 612
E VV+ ++K +N ++ +A WD Q ++G + ++ + H A+I
Sbjct: 138 EEVVSLFFKDSTRVMLNFEQAIE-KHPKDFARWDTHMQQLKGSCSRKTLLGEGEPHIASI 196
Query: 613 NCWNPGSECRLLHN 654
+EC N
Sbjct: 197 GASRVKNECTSFRN 210
>01_05_0485 -
22628999-22629325,22630340-22630450,22630888-22631034,
22631283-22631337,22631761-22632134,22632926-22633000,
22633419-22633670
Length = 446
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 463 ELSSAINKVNNVDVSFVMYYAPWDAESQYVRGEFEKTAMV 582
EL+ A+ + D YY P S+Y +G+ EK+++V
Sbjct: 391 ELAMALQTIILTDEESCNYYRPTPTGSRYPKGDREKSSIV 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,890,912
Number of Sequences: 37544
Number of extensions: 318048
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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