Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10l22
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 33 0.22
01_03_0259 - 14312197-14312259,14312384-14312456,14312651-143127... 31 0.50
02_02_0581 + 11770511-11770527,11770754-11771612,11771652-117717... 30 1.5
06_03_0854 + 25400855-25403741,25406174-25407708 29 2.7
10_08_0328 - 16805296-16806121,16806493-16807274 28 4.6
10_08_0213 - 15912048-15912716 28 4.6
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 28 4.6
01_04_0012 - 15075505-15075636,15075719-15075784 28 4.6
11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340 28 6.1
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 8.1
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 27 8.1
02_04_0421 - 22756903-22757384,22757585-22758047 27 8.1
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 564 TSPIAV-VPAPAYIILLINPPLSPNMKPVRPPIATAPYLTS 445
T+P+A+ PAP + + PPL P PP+AT P L +
Sbjct: 421 TAPLALRAPAPHLCVSRMPPPLVPTPPAHAPPVATPPTLAT 461
>01_03_0259 -
14312197-14312259,14312384-14312456,14312651-14312754,
14313073-14313192,14313278-14313364,14313925-14314023,
14314110-14314203,14314298-14314368,14315258-14316040
Length = 497
Score = 31.5 bits (68), Expect = 0.50
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 122 LVPVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQKTSYLKSALL 301
L P+ +++ + S P+ PPP S + P + Y+ A A TSY S L
Sbjct: 34 LAPLPSSSSLADASSPPPSPPPPHPSSSSAAAQGPSSSYSAAAAAGAGGASTSYASS--L 91
Query: 302 PPVRALR 322
PP R R
Sbjct: 92 PPSRLRR 98
>02_02_0581 +
11770511-11770527,11770754-11771612,11771652-11771749,
11772903-11773631,11775159-11775231,11775698-11776066,
11777009-11777038
Length = 724
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = +2
Query: 95 VMSSMGAIALVPVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYLEAKAHEQK 274
V+ A+ +P I A N+ G P R P T H YAEY+ +
Sbjct: 286 VIMDPSAVGSMP-ISANQDTNKNDIGVDSLPTKRGVVFPFRNTHHVSYAEYIRDLEFKPL 344
Query: 275 TSYLKSALLPPVRALREQV-QTFVDQTDFI 361
Y+K + V R++V + ++ F+
Sbjct: 345 IEYIKHTPVMLVGPTRQRVYRLMTEEAKFV 374
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 543 PAPAYIILLINPPLSPNMKPVRPPIATAP 457
PAPA ++LL PP S ++ PV +A P
Sbjct: 226 PAPAPLLLLPAPPPSSDVSPVTVQVAAPP 254
>10_08_0328 - 16805296-16806121,16806493-16807274
Length = 535
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 234 SACGVSYNGS--SDTRMGGGFAGPFDSSLIGAAALIT 130
SA G SYN S S G GF G F S+L G L++
Sbjct: 413 SALGTSYNCSLHSVYLAGNGFTGVFPSTLEGCKTLVS 449
>10_08_0213 - 15912048-15912716
Length = 222
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 109 GGYCFGSGYQSGRPYQRG 162
GGY GSGY SGR Y +G
Sbjct: 162 GGYGSGSGYGSGRGYGQG 179
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 546 VPAPAYIILLINPPLSPNMKPVRPPIATAPY 454
+P P ++L + PP P + P+ P +A A +
Sbjct: 85 LPLPPPVLLYLQPPPPPPLLPLLPKVAAATF 115
>01_04_0012 - 15075505-15075636,15075719-15075784
Length = 65
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 498 PNMKPVRPPIATAPYLTSLFSSSRKYLKIH 409
P +P RPP A AP L L +S +IH
Sbjct: 33 PRRRPCRPPTADAPPLQQLRPNSAWMFRIH 62
>11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340
Length = 369
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 173 PAKPP-PMRVSELPLYETPHADYAEYLEAKAHEQKT 277
P +PP P +S LP Y T AD E E +A+E+++
Sbjct: 17 PTRPPQPPSLSLLPAYVTKAADDEECEEWQAYEEES 52
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 564 TSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAP 457
TS ++PAP L +P S N+ P++PP AT P
Sbjct: 732 TSNNNMMPAPQNTNQLSSPTASSNLPPMQPP-ATRP 766
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 564 TSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAP 457
TS ++PAP L +P S N+ P++PP AT P
Sbjct: 820 TSNNNMMPAPQSTNQLSSPTTSSNLPPMQPP-ATRP 854
>02_04_0421 - 22756903-22757384,22757585-22758047
Length = 314
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +3
Query: 207 YHYMKLHMPIMLSILKPKPMSRRQVTLNQHYYLQYVL 317
Y +++ HM ++ + P+P+ R + ++H+ L+ V+
Sbjct: 174 YPHVRYHMDVLGGVRAPQPVGREEKFNHRHFSLRSVI 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,056,170
Number of Sequences: 37544
Number of extensions: 345108
Number of successful extensions: 1241
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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