Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10l17
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   144   1e-35
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   0.81 
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.7  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   7.5  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   10.0 
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   10.0 

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  144 bits (348), Expect = 1e-35
 Identities = 70/120 (58%), Positives = 84/120 (70%)
 Frame = +1

Query: 199 IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 378
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 379 KVRAGRGFTLREIRAAGLNPVFARTIGIAVXPRRRNKSVESLQINVXRIKEYRARLILFP 558
           KVRAGRGFTL E++AAG++   A TIGI V  RRRN+S ESLQ NV RIK Y A LI+FP
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -2

Query: 411  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 292
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 392 VEDSLFVKLGPQD*TQYLPERLELL 466
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 203 LMDISTRIGKDLLKLGLTSQLDDTAES 283
           L+DIS R G+D     L S+L D  +S
Sbjct: 556 LLDISKRKGRDSFVAALNSRLKDIKDS 582


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -2

Query: 480 STGXYSNSNRSGKYWVQSCGPNFTKSESSTGAYFSMVPNSWASHY 346
           ST  YSN  R   +  + C     K+E +      + PN +++ Y
Sbjct: 368 STVSYSNPVRQSLFTFEDCKRKLPKAECAAQRLKEIYPNMFSTGY 412


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 428 PAALISRRVNPLPARTLVW 372
           P ALI+ +++ LP R+L+W
Sbjct: 241 PRALITVKLSQLPLRSLLW 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,304
Number of Sequences: 5004
Number of extensions: 45164
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)