Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10l17
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   146   1e-35
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    94   5e-20
U80023-14|AAG24047.2|  334|Caenorhabditis elegans Serpentine rec...    29   2.3  
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL021566-1|CAA16501.1|  328|Caenorhabditis elegans Hypothetical ...    28   5.2  
Z82056-1|CAB04854.1|  325|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine rece...    27   9.1  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  146 bits (353), Expect = 1e-35
 Identities = 66/125 (52%), Positives = 86/125 (68%)
 Frame = +1

Query: 184 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 363
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 364 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVXPRRRNKSVESLQINVXRIKEYRAR 543
            RY+TK R GRGF+L+E++AAG++   ARTIGIAV  RR NK+ E L+ N  R+KEY+A+
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123

Query: 544 LILFP 558
           LILFP
Sbjct: 124 LILFP 128


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 94.3 bits (224), Expect = 5e-20
 Identities = 41/84 (48%), Positives = 54/84 (64%)
 Frame = +1

Query: 184 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 363
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 364 VRYHTKVRAGRGFTLREIRAAGLN 435
            RY+TK R GRGF+L+E++AA  N
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAEEN 87


>U80023-14|AAG24047.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein234 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 9   SFTLFSLPWLVMR*SLKFLAINY*NNKLLFFRNKVHGVVRTSISIF 146
           +F LF +P   +   + F   N  +N L+FF   +HG+  T I IF
Sbjct: 245 TFVLFIVPVQCIVTFVYFHHQNQFHNNLIFFALAIHGIASTLIMIF 290


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -3

Query: 320 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 231
           RGAT A+A + I++CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


>AL021566-1|CAA16501.1|  328|Caenorhabditis elegans Hypothetical
           protein F08E10.1 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 54  LKFLAINY*N---NKLLFFRNKVHGVVRTSISIFV 149
           + F+  NY N   N L+ F   VHG+  T I +FV
Sbjct: 257 ISFIYFNYQNQFHNNLIVFAFAVHGIASTLIMVFV 291


>Z82056-1|CAB04854.1|  325|Caenorhabditis elegans Hypothetical
           protein T26H5.3 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 6   FSFTLFSLPWLVMR*SLKFLAINY*NNKLLFFRNKVHGVVRTSISIF 146
           F+  LF +P  V+   + F   N  ++ L+FF   +HG+  T I +F
Sbjct: 244 FTLFLFVVPVNVLIAFVYFDYQNQFHSNLIFFALAIHGIASTLIMVF 290


>U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine
           receptor, class h protein231 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 9   SFTLFSLPWLVMR*SLKFLAINY*NNKLLFFRNKVHGVVRTSISIFV 149
           +F LF +P  ++   + F   N   N L+F    +HG+  T I +FV
Sbjct: 245 TFILFLIPISMIILFVYFRYQNQIFNNLIFVSLAIHGIASTLIMVFV 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,226,564
Number of Sequences: 27780
Number of extensions: 247251
Number of successful extensions: 510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)