Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10l15
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 29 0.21
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 0.64
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 0.64
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 1.1
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 1.5
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 2.6
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 2.6
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 2.6
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 25 3.4
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 3.4
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 3.4
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 24 6.0
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 6.0
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 24 6.0
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 6.0
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 24 6.0
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 24 7.9
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 29.1 bits (62), Expect = 0.21
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 47 ISTPLTKKNPEVFNKTMNNYSALANKKIKLL-DAQIDNLNKKQEQEVKEHELRCTLLQLE 223
I T + KKNPE+ + T+N+ + + K LL +LN ++ E E+R L +
Sbjct: 171 IHTNMWKKNPELIS-TLNSTNTMVAKINSLLRGVSFPSLNNDNQEASLEDEIRSQLFEKT 229
Query: 224 I 226
I
Sbjct: 230 I 230
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.5 bits (58), Expect = 0.64
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +2
Query: 14 PKSSNFLLKRKISTPLTKKNPEVFNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEH 193
P S L R ++T + K P + ++N+ + N K+ L+ Q++NL + ++K
Sbjct: 21 PFQSRSQLPRFLATSV--KKPNLKKPSVNSANETKNPKLASLEFQLENL----KNDLKRK 74
Query: 194 ELRCTLLQLEIDIK 235
EL Q+E+ K
Sbjct: 75 ELEFEREQIELQRK 88
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.5 bits (58), Expect = 0.64
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +2
Query: 77 EVFNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQLEIDIKKKVLD 250
E+F+KT L + K+L+A D + +Q+ K+ E L ++ ++K +++D
Sbjct: 473 ELFHKTQELNEELQSCLQKILEASAD--RNESKQDAKKREALYALKRIYPEVKGRIID 528
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.6 bits (56), Expect = 1.1
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +2
Query: 35 LKRKISTPLTKKNP--EVFNKTMNNYSALANKKIKLLD--AQIDNLNKKQEQEVKEHELR 202
LK K+S T+ N+ N L + D + ++++NK Q E+K + +
Sbjct: 804 LKNKLSEESTRLQELQSQLNQDKNQIETLNERISAAADELSSMESINKNQANELKLAKQK 863
Query: 203 CTLLQLEIDIKKKV 244
C+ LQ +I+ K+
Sbjct: 864 CSNLQEKINFGNKL 877
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 1.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 179 EVKEHELRCTLLQLEIDIKKKVLDSFN*LIKCVVIKY 289
EVK + T+ + EID+ +K L N LI+ + +++
Sbjct: 312 EVKSRSMEFTVPEAEIDVIEKRLQPLNNLIETLPVEF 348
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 71 NPEVFNKTMNNYSALAN-KKIKLLDAQIDNLNKKQEQEVKEH 193
N +M +SA+ + LDA++DN++ ++ +E +H
Sbjct: 1294 NKRTTRNSMKTHSAMDTLTAVAALDAELDNMSNEKAKEEVDH 1335
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 2.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 316 QLQQFTITYIFNYNAFYQLIKTIEYFFFN 230
Q QQ + Y+ NY Y+LI+ ++ + F+
Sbjct: 229 QFQQDFLAYLKNYRHTYELIEKLKMYDFS 257
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.4 bits (53), Expect = 2.6
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +2
Query: 71 NPEVFNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQLEIDIKKKVLD 250
N E + K+K++D IDN K Q E LL++ + K KVL+
Sbjct: 772 NKEKKKNAQETKQQIVQFKVKVIDL-IDNYYKTQPNNGLGFEFLIPLLEMILKTKHKVLE 830
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 119 NKKIKLLDAQIDNLNKKQEQEVKE 190
NKK++L + ++ L+ QEQE E
Sbjct: 36 NKKLQLPNVELSTLSHTQEQEFNE 59
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 3.4
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = -2
Query: 325 LITQLQQFTITYIFNYNAFYQLIKTIE 245
L+ +L +FTI + +NY++ +LI+ ++
Sbjct: 28 LLDELTKFTILHPYNYDSHIKLIEELK 54
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 65 KKNPEVFNKTMN-NYSALANKKIKLLDAQIDNLNKKQE 175
K+ E+ ++ + N ++++KK K LD I+N KK+E
Sbjct: 67 KRKQELKDQLLKENEGSISSKKKKRLDKYIENKLKKEE 104
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 86 NKTMNNYSALANKKIKLLDAQIDNLNKKQ 172
N +MN YS +N+ + L + N N +Q
Sbjct: 127 NTSMNPYSCDSNENLSTLSSVNQNFNSRQ 155
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 24.2 bits (50), Expect = 6.0
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 89 KTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQLEIDIKKK 241
K + S L NK L++ I+ KK + VK+H+ + L +KK+
Sbjct: 223 KKVKKRSDLGNKYESTLNSLINKSVKKHNKLVKKHKPLPSTLDYTAYVKKR 273
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 24.2 bits (50), Expect = 6.0
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 14 PKSSNFLLKRKISTPLTKK-NPEVFNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKE 190
P + + K++ P+ ++ NPE+FN++ +N + L NL+ + E
Sbjct: 107 PSTLEQIFKQRNVLPILQRFNPELFNRSSDNETPLFPNNSPPASTTALNLSSNIVPSINE 166
Query: 191 HELRCTLLQLEIDIKKKVL 247
++ L Q + D+ K L
Sbjct: 167 SKI---LEQEDDDVSNKSL 182
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.2 bits (50), Expect = 6.0
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 32 LLKRKISTPLTKKNPEVFNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKE 190
++ R IS P P+ ++ + + NK +L D+ KK E+E+KE
Sbjct: 423 MVDRMISLPSI---PDAIFLLLSIFDSFVNKFSELNDSLDQFFKKKYEEEIKE 472
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 24.2 bits (50), Expect = 6.0
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 125 KIKLLDAQIDNLNKKQEQEVKEHELRCTLLQL-EIDIKK 238
++K +DN+ K + E EH ++ L QL EI + K
Sbjct: 358 EVKPKTTALDNIEKSKLSEENEHGIKGKLKQLAEIKLSK 396
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 7.9
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 8 ETPK--SSNFLLKRKISTPLTKKNPEVFNKTMNNYSALANKKIKL 136
E PK S++ + RKI+ P ++K P + ++ LA K + L
Sbjct: 26 EVPKEASADVMATRKIAKPKSRKRPTSGVSSPGIFANLAAKPVSL 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,197,116
Number of Sequences: 5004
Number of extensions: 21089
Number of successful extensions: 92
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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