Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10l15
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0671 - 20571512-20571876,20571902-20572581,20573011-20573108 29 1.0
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 29 1.4
11_06_0132 - 20431122-20431477,20431739-20433758 27 4.1
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 27 4.1
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 27 4.1
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33... 27 4.1
03_05_0179 - 21583234-21584336,21586274-21586358,21586665-215867... 27 5.5
11_01_0387 + 2922208-2922704,2922956-2923088,2923487-2923549,292... 26 9.6
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322... 26 9.6
04_03_0282 - 13874547-13874738,13875047-13875134,13875222-138753... 26 9.6
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465... 26 9.6
>07_03_0671 - 20571512-20571876,20571902-20572581,20573011-20573108
Length = 380
Score = 29.1 bits (62), Expect = 1.0
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 104 YSALANKKIK--LLDAQIDNLNKKQEQEVKEHELRCTLLQLEIDIKKKVL 247
+SAL K + LL + + N + + +V+ H +CTLL+ +KK+VL
Sbjct: 304 FSALNKDKERSHLLPSALLWENSRMDNDVENHPSKCTLLRKANRLKKRVL 353
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 28.7 bits (61), Expect = 1.4
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 53 TPLTKKNPEVFNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQLEI 226
TP +K + EV N+ AL K +L + NKK Q + E L LL E+
Sbjct: 701 TPQSKTSSEVSQIKPENFEALIQKLEQLQSMNDEVANKKDHQYIYEILLASGLLHKEL 758
>11_06_0132 - 20431122-20431477,20431739-20433758
Length = 791
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -1
Query: 227 QFLIVEVYISVHAPLLLVLVFY 162
+FL++ + +S+ A LLL+L+FY
Sbjct: 429 KFLVIPIVVSLVATLLLLLLFY 450
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 27.1 bits (57), Expect = 4.1
Identities = 22/77 (28%), Positives = 37/77 (48%)
Frame = +2
Query: 41 RKISTPLTKKNPEVFNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQL 220
R++ + + N E + +LA KI L+ Q+ K + E+K E + LL+L
Sbjct: 558 RELKSTILDLNSEKDAVLLQQQQSLA--KISELELQLS----KTQLELKNSEQKMQLLEL 611
Query: 221 EIDIKKKVLDSFN*LIK 271
EI K + +DS +K
Sbjct: 612 EITQKSESMDSLTLSLK 628
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 89 KTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQLEIDIKKKVL 247
K + L +KK++L D + + + + EL ++Q+E+DI++K L
Sbjct: 699 KRVEEERLLESKKVQLDDIRKTSADINRVTSSDTSELEAEMMQVEVDIEQKEL 751
>05_01_0048 +
331155-333077,333208-333354,333540-334087,334481-334616
Length = 917
Score = 27.1 bits (57), Expect = 4.1
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +2
Query: 50 STPLTKKNPEVFNKTMNNYSA----LANKKIKLLDAQIDNLNKK-QEQEVKEHE 196
+TP+ + F+K+ + A L N++I L AQ+DNL + + QEV+ H+
Sbjct: 605 TTPVPTTHGLSFSKSATDNLAKTNELLNQEIDRLHAQVDNLRHRCEHQEVELHK 658
>03_05_0179 -
21583234-21584336,21586274-21586358,21586665-21586713,
21586801-21586874,21586958-21587050,21587120-21587174,
21587348-21587421,21587702-21587814,21587911-21588168,
21588915-21589012,21589139-21589256,21589754-21589848,
21590001-21590159,21590336-21590525,21590881-21591021,
21591142-21591176,21591659-21591699
Length = 926
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 113 LANKKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQL 220
L + K+ +DA++ L ++ E+++ EH+ +LL L
Sbjct: 45 LIDDKVNNVDAELHVLQEEHEKDLLEHDTSSSLLPL 80
>11_01_0387 +
2922208-2922704,2922956-2923088,2923487-2923549,
2923564-2923680,2925040-2925399
Length = 389
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 17 KSSNFLLKRKISTPLTKKNPEVFNKTMNNYSALANKKIKLLDAQIDNLN 163
K S ++ K S L K P +FN +N+ +++K+ Q+ N+N
Sbjct: 279 KESKYIYPDKQSNLLRK--PSLFNAALNDALREEVQRLKIAAGQVPNMN 325
>09_03_0096 +
12328116-12329561,12329810-12329852,12332119-12332237,
12333326-12333853
Length = 711
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 125 KIKLLDAQID-NLNKKQEQEVKEHELRCTLLQLEIDIKKK 241
++++L Q D N +K++++ E E L QLE ++KKK
Sbjct: 351 ELRVLRMQHDENQRRKKDKQEMEDETMKRLTQLENELKKK 390
>04_03_0282 -
13874547-13874738,13875047-13875134,13875222-13875328,
13875487-13875542,13875853-13875882,13877397-13877505,
13877774-13878318,13879584-13879668,13879753-13879914,
13880293-13880434,13880524-13880624,13882307-13882489
Length = 599
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 140 DAQIDN-LNKKQEQEVKEHELRCTL 211
D + N L+KK + V EHELRC +
Sbjct: 283 DMHVQNGLHKKAKLMVTEHELRCRM 307
>03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573,
12346712-12347567,12347760-12347883,12348469-12348688,
12348771-12349229,12349318-12349519
Length = 1302
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 107 YNCSLFY*TLLDSFW*GV*IFF 42
YN +LF+ T+LD+ W + +F+
Sbjct: 1144 YNLTLFWITMLDTLWQSLVLFY 1165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,608,577
Number of Sequences: 37544
Number of extensions: 102152
Number of successful extensions: 272
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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