Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10l15
(350 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10009| Best HMM Match : CPL (HMM E-Value=2.5) 28 2.4
SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037) 27 4.3
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 27 4.3
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14) 26 7.5
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 26 7.5
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 26 7.5
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_58071| Best HMM Match : Death (HMM E-Value=8.4e-12) 26 7.5
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 26 9.9
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 26 9.9
SB_20162| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_7290| Best HMM Match : RNA_POL_M_15KD (HMM E-Value=6.8) 26 9.9
>SB_10009| Best HMM Match : CPL (HMM E-Value=2.5)
Length = 321
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 113 LANKKIKLLDAQIDNLNKKQEQEVKEHE 196
LA+ +I LL I N+N+++ Q V EHE
Sbjct: 128 LASARIALLSETIWNMNQEEVQTVLEHE 155
>SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.5 bits (58), Expect = 3.2
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 110 ALANKKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQLEIDIKKKVLDSF 256
A +KKI L I+ K +++E+KEH R + E+ KKV D F
Sbjct: 295 AAKDKKISELQKTINMSEKARQRELKEHRNRYKNAKEEL---KKVQDDF 340
>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2208
Score = 27.5 bits (58), Expect = 3.2
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 35 LKRKISTPLTKKNPEVFNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHE 196
LK KIS TK V N+T S+ + K ++ + + DNL +KQ+ + E +
Sbjct: 986 LKVKISALETKLKKAV-NETKRYESSSSQLKQQVKELETDNLQRKQKLSLTEKD 1038
>SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)
Length = 396
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 77 EVFNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQLEIDIKKKVLDSF 256
E + + + K++ AQ+D ++ Q+++E+E T Q+E D +++LD
Sbjct: 49 EAREQVLEELTEYYENKLQEKTAQLDQSQEESRQQLREYEE--TKKQIEEDADREILDIK 106
Query: 257 N 259
N
Sbjct: 107 N 107
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 131 KLLDAQIDNLNKKQEQEVKEHELRCTLLQLEIDIKKKVLDSFN*LIKCVVIKYI 292
KL DA + + K+ QE+ L+ + +LE + + VLD+ +K + +YI
Sbjct: 4432 KLSDAAVSCVEKQYRQELPAVGLQDKIKELEEEQQTDVLDAAVVALKRFIFRYI 4485
>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
Length = 480
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 74 PEVFNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHE 196
PE F+ N + +ANK L +NKKQE V + +
Sbjct: 9 PEKFDMKKNEPAPIANKYKAYLYRTNKQMNKKQEHPVTQRK 49
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 122 KKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQLEIDIKKK 241
KK L+ ++ N K +EQE +EH + L+ E+ + K
Sbjct: 445 KKNNQLEDELTNQGKSKEQEAQEHSEKYEALKNEMQQQGK 484
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 158 LNKKQEQEVKEHELRCTLLQLEIDIKKKVLDSFN*LIKCVVIK 286
L K + HE R L +LE +K+K + + ++ CV +K
Sbjct: 907 LQGKSAADELAHEFRVQLRRLEAQVKQKPVQYKDAIVDCVDLK 949
>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 26.2 bits (55), Expect = 7.5
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 2 ESETPKSSNFLLKRKISTPLTKKN-PEVFNKTMNNYSALANKKIKLLDAQIDNLNKKQEQ 178
E+E KSS L+RK+ KKN E + N +++ L ++ N+ ++
Sbjct: 915 EAEKTKSSIVSLERKLEEVCNKKNVVEKLLREKNASCTDLQEEVYRLKEKLANMENAHQR 974
Query: 179 EVKEHELRCTLL 214
E++ + R L+
Sbjct: 975 EMETEKQRHVLM 986
>SB_58071| Best HMM Match : Death (HMM E-Value=8.4e-12)
Length = 633
Score = 26.2 bits (55), Expect = 7.5
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +2
Query: 113 LANKKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQLEIDIKKKVLDSFN*LIKCVVIKY 289
+A +KI + Q+D L + QEQ + L+ LL + KVL+ L KC+ +Y
Sbjct: 271 IATEKINGEEEQVDGLTQDQEQPLP--NLKDDLLSEAVTNNPKVLED---LAKCLDTEY 324
>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1507
Score = 26.2 bits (55), Expect = 7.5
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 119 NKKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQLEI-DIKK 238
+KKI L Q+ + NK++E+E K+ + T + EI +IKK
Sbjct: 667 SKKISDLVKQLHSFNKEKEKERKKWKDELTAREKEITEIKK 707
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 10 NPKEQ*FSIKEKNIYTPHQKESRSVQ 87
NP +++ +NIY PH K ++Q
Sbjct: 2780 NPNIYNLTVRARNIYPPHYKADAAIQ 2805
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 25.8 bits (54), Expect = 9.9
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 20 SSNFLLKRKISTPLTKKNPEVFNKTMNNYSALANKKIKLL---DAQIDNLNKKQEQEVK 187
SSN + +STP+ K+P + NN +L + ++ L + + L KK + E K
Sbjct: 1139 SSNVPIPVNVSTPVKVKSPFTGKRLDNNTLSLMERVVQHLLKDERKAKELRKKHKHEHK 1197
>SB_20162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 842
Score = 25.8 bits (54), Expect = 9.9
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 119 NKKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQLEIDIKKK 241
N K KL + Q ++ QE ++ EHE R LLQ E+ +K+
Sbjct: 4 NLKAKLSEKQKESAI--QEDKIAEHENRTRLLQSELLSEKE 42
>SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 25.8 bits (54), Expect = 9.9
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 65 KKNPEVFNKTMNNYSALANKKIKLLDAQIDNLNKKQEQEVKEHELRCTLLQLEIDIKKKV 244
KKN + N L + L D + D+L+KKQ +E + + R + LE + + K
Sbjct: 140 KKNLNKYPVKNNADRLLVPPRNDLNDTEEDSLSKKQLREAAKQKKREEKILLETERRLKK 199
Query: 245 LD 250
L+
Sbjct: 200 LE 201
>SB_7290| Best HMM Match : RNA_POL_M_15KD (HMM E-Value=6.8)
Length = 143
Score = 25.8 bits (54), Expect = 9.9
Identities = 7/27 (25%), Positives = 19/27 (70%)
Frame = +2
Query: 173 EQEVKEHELRCTLLQLEIDIKKKVLDS 253
++++K+H C+L+Q +D + ++L +
Sbjct: 4 DEQLKKHSHTCSLIQANLDAQDRILSA 30
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,118,909
Number of Sequences: 59808
Number of extensions: 131071
Number of successful extensions: 473
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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