Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10l10
(426 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 0.92
SB_58104| Best HMM Match : TPR_1 (HMM E-Value=0) 29 1.6
SB_59383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 28 3.7
SB_232| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_22732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-23) 27 4.9
SB_20210| Best HMM Match : TPR_1 (HMM E-Value=4.1e-40) 27 4.9
SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8) 27 6.5
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30) 27 6.5
SB_34634| Best HMM Match : Baculo_19 (HMM E-Value=7.5) 27 6.5
SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061) 27 6.5
SB_56077| Best HMM Match : Exo_endo_phos (HMM E-Value=0.55) 27 8.6
>SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 30.7 bits (66), Expect = 0.53
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 149 YNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTTVENKRLQIILN 286
YND S YN +HN AL ++Q N T E K+ + N
Sbjct: 111 YNDMG---STYNKLHNYNKALDYYKQSLNAYMKTGEERKQANVYKN 153
>SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 425
Score = 29.9 bits (64), Expect = 0.92
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +2
Query: 122 QNTSSLEHLYNDFDQWISDY----NDIHNIQSALQKHRQKENTQFTTTVENKRLQIILNN 289
++++ ++H F Q S Y D+H+ QSA ++Q +N Q T+ N + ++N+
Sbjct: 110 EDSADVDHDKPGFKQDASVYALGPQDVHHGQSASANYKQAQNCQLHQTIPNHKQARVINS 169
>SB_58104| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 398
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 173 SDYNDIHNIQSALQKHRQKENTQFTTTVENKRLQIILN 286
S YN +HN AL ++Q N T E K+ + N
Sbjct: 80 STYNKLHNYNKALDYYKQSLNACMKTEEERKQANVYKN 117
>SB_59383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Frame = +2
Query: 152 ND-FDQWISDYNDIHNIQSALQKHRQKE-------NTQFTTTVENK----RLQIILNNDI 295
ND DQW +NDI + + +++HR K N + + ++ + R+ L D
Sbjct: 297 NDALDQWYKLFNDILTVHAPIKEHRIKRPLKLDWFNAEISAAIKARNCLHRIATSLKTDT 356
Query: 296 ALILYRTKNRNHIN 337
+ YR + RNH++
Sbjct: 357 SWSEYR-RARNHVH 369
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 243 NCVFSFCLCFCRAL 202
N VF+ CLC CRAL
Sbjct: 300 NAVFASCLCLCRAL 313
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 146 LYNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTTVENKR 268
+Y+ D + HN++ ++ +KE T FT TVEN +
Sbjct: 1758 VYSGSDSGTELEDQNHNLREGRERPIKKERTIFTKTVENNQ 1798
>SB_232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 713
Score = 27.9 bits (59), Expect = 3.7
Identities = 22/60 (36%), Positives = 28/60 (46%)
Frame = +2
Query: 149 YNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTTVENKRLQIILNNDIALILYRTKNRN 328
YND S YN +HN AL ++Q N T E R Q + N+I LYR+ N
Sbjct: 112 YNDMG---STYNKLHNYNKALDYYKQSLNAYMKTGEE--RGQADVYNNIG-NLYRSLGDN 165
>SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1690
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +2
Query: 92 SYVNMTVEKKQNTSSLEHLYNDFDQWISDYNDIHNIQSALQKH 220
+Y N E + L +Y +FDQ +DI+ +++ K+
Sbjct: 929 NYCNKIKEPMEIVEMLNEVYTEFDQLTDSNDDIYKVETVGDKY 971
>SB_22732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-23)
Length = 457
Score = 27.5 bits (58), Expect = 4.9
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Frame = +2
Query: 152 ND-FDQWISDYNDIHNIQSALQKHRQKE-------NTQFTTTVENK----RLQIILNNDI 295
ND DQW +NDI + + +++HR K N + + ++ + R+ L D
Sbjct: 19 NDALDQWYKLFNDILTVHAPIKEHRIKRPLKPDWFNAEISAAIKARNCLHRIATSLKTDT 78
Query: 296 ALILYRTKNRNHI 334
+ YR + RNH+
Sbjct: 79 SWSEYR-RARNHV 90
>SB_20210| Best HMM Match : TPR_1 (HMM E-Value=4.1e-40)
Length = 772
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 149 YNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTTVENKRLQIILN 286
YND S YN +HN AL ++Q N T E + + N
Sbjct: 112 YNDMG---STYNKLHNYNKALDYYKQSLNAYMKTGEERGQADVYNN 154
>SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8)
Length = 714
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 170 ISDYNDIHNIQSALQKHRQKEN 235
+SD +DIH I ALQK +++EN
Sbjct: 463 VSDVSDIHEI--ALQKEKEREN 482
>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
Length = 1440
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 332 INTDGLFNGRSSRNGLSDFRL 394
I T+GLF+ RSS N LSD R+
Sbjct: 9 IETEGLFSKRSSSNILSDPRI 29
>SB_34634| Best HMM Match : Baculo_19 (HMM E-Value=7.5)
Length = 151
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 332 INTDGLFNGRSSRNGLSDFRL 394
I T+GLF+ RSS N LSD R+
Sbjct: 9 IETEGLFSKRSSSNILSDPRI 29
>SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)
Length = 503
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 113 EKKQNTSSLEHLYNDFDQWISDYNDIHNIQSALQK-HRQKENTQFT 247
EK+Q SL+H N ++ + N+Q+ L++ RQ EN + T
Sbjct: 342 EKQQLVISLQHDLNQVSSKEAESQQVRNLQNQLEETKRQLENREKT 387
>SB_56077| Best HMM Match : Exo_endo_phos (HMM E-Value=0.55)
Length = 368
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 152 ND-FDQWISDYNDIHNIQSALQKHRQK 229
ND DQW +NDI + + +++HR K
Sbjct: 308 NDALDQWYKLFNDILTVHAPIKEHRIK 334
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,220,733
Number of Sequences: 59808
Number of extensions: 167140
Number of successful extensions: 513
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -