Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10l10
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28580.1 68415.m03472 hypothetical protein contains Pfam prof...    30   0.75 
At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containi...    28   2.3  
At3g09922.1 68416.m01184 hypothetical protein no ATG start, anno...    28   2.3  
At5g19450.2 68418.m02318 calcium-dependent protein kinase 19 (CD...    27   5.3  
At5g19450.1 68418.m02317 calcium-dependent protein kinase 19 (CD...    27   5.3  
At3g04070.1 68416.m00430 no apical meristem (NAM) family protein...    27   5.3  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    27   7.0  
At5g44635.1 68418.m05469 minichromosome maintenance family prote...    26   9.3  

>At2g28580.1 68415.m03472 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 468

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 18/82 (21%), Positives = 43/82 (52%)
 Frame = +2

Query: 92  SYVNMTVEKKQNTSSLEHLYNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTTVENKRL 271
           +Y+NM + KK+   S+  +Y   DQ + ++  I  I     +    E+T +  T +   +
Sbjct: 88  NYLNMELHKKKCLDSIADIYG--DQPVKEFRRIIEINEKFIRDSYAESTIWINTKD--FV 143

Query: 272 QIILNNDIALILYRTKNRNHIN 337
           ++IL++ + ++L+  +  + +N
Sbjct: 144 EMILHDSVFILLFFIQTGSTLN 165


>At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 534

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 297 AISLFRMICRRLFSTVVVNCVFSFCLCFCR 208
           A+ ++RMICR+  + +  +C   F    CR
Sbjct: 363 AVDVYRMICRKGITVLDESCYIEFANALCR 392


>At3g09922.1 68416.m01184 hypothetical protein no ATG start,
           annotated according to PMID:11123795;  IPS1 mRNA,
           complete sequence GI:8164007
          Length = 80

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 318 LVLYNINAISLFRMICRRLFSTVVVNCVFSFCLC 217
           L ++N   +SLF M+C   FS++ + C  S  LC
Sbjct: 36  LCIFNFVILSLFSMLC---FSSLCLGCTHSRALC 66


>At5g19450.2 68418.m02318 calcium-dependent protein kinase 19
           (CDPK19) identical to calcium-dependent protein kinase
           [Arabidopsis thaliana] gi|836942|gb|AAA67655
          Length = 533

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 98  VNMTVEKKQNTSSLEHLYNDFDQWISDYNDIHNIQSAL 211
           V++ ++K  N   L   ++ FDQ  SDY +I  ++ AL
Sbjct: 423 VSVHLKKMANDEHLHKAFSFFDQNQSDYIEIEELREAL 460


>At5g19450.1 68418.m02317 calcium-dependent protein kinase 19
           (CDPK19) identical to calcium-dependent protein kinase
           [Arabidopsis thaliana] gi|836942|gb|AAA67655
          Length = 533

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 98  VNMTVEKKQNTSSLEHLYNDFDQWISDYNDIHNIQSAL 211
           V++ ++K  N   L   ++ FDQ  SDY +I  ++ AL
Sbjct: 423 VSVHLKKMANDEHLHKAFSFFDQNQSDYIEIEELREAL 460


>At3g04070.1 68416.m00430 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM GB:CAA63101 [Petunia x hybrida]
          Length = 359

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 128 TSSLEHLYNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTTVENKRLQIILN 286
           TS+ EH  ND + ++     + N+Q+     RQK +  F+  ++   L  + N
Sbjct: 200 TSNQEHEENDNEPFVDRGTFLPNLQNDQPLKRQKSSCSFSNLLDATDLTFLAN 252


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 417 YNFELIYLRRKSLKPFLDE 361
           +N  LIYLRRK L+  LD+
Sbjct: 395 HNINLIYLRRKFLESLLDD 413


>At5g44635.1 68418.m05469 minichromosome maintenance family protein
           / MCM family protein similar to SP|P97311 DNA
           replication licensing factor MCM6 {Mus musculus};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 831

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 146 LYNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTTVENKR 268
           + +D D+ ++DY+  H+I    QKH    + +F TTV+ KR
Sbjct: 535 MIDDPDE-VTDYHIAHHIVRVHQKHEAALSPEF-TTVQLKR 573


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,926,744
Number of Sequences: 28952
Number of extensions: 104625
Number of successful extensions: 333
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)