Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10l05
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    31   0.84 
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ...    31   0.84 
At5g61770.3 68418.m07752 brix domain-containing protein contains...    30   1.1  
At5g61770.2 68418.m07751 brix domain-containing protein contains...    30   1.1  
At5g61770.1 68418.m07750 brix domain-containing protein contains...    30   1.1  
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle...    29   3.4  
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ...    29   3.4  
At3g07195.1 68416.m00858 proline-rich family protein                   29   3.4  
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t...    29   3.4  
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ...    29   3.4  
At1g34480.1 68414.m04285 DC1 domain-containing protein contains ...    29   3.4  
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ...    28   4.5  
At5g42280.1 68418.m05146 DC1 domain-containing protein contains ...    28   5.9  
At4g39680.1 68417.m05614 SAP domain-containing protein contains ...    27   7.8  
At3g21210.1 68416.m02680 universal stress protein (USP) family p...    27   7.8  
At3g07540.1 68416.m00900 formin homology 2 domain-containing pro...    27   7.8  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    27   7.8  

>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 100 YMCSLCTVTTHIHCSFAKNYAKYHVQTLRYSQT 2
           Y C++C +T H+HC F  +       T  Y  T
Sbjct: 623 YTCNICCITIHLHCIFGNSVYMKPGLTFEYGFT 655


>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 589

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 100 YMCSLCTVTTHIHCSF-AKNYAK 35
           Y C++C +T H+HC F + +Y K
Sbjct: 508 YTCNICCITIHLHCIFGSSSYMK 530


>At5g61770.3 68418.m07752 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 346

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +3

Query: 114 LKCANSDKIIKSLLFGSRLYFTEITMPRLENPPTEDFRRVLREKALSHSLFYLKLGAGMT 293
           +K A   K ++  L    L +T +++   +     DF  V     ++H L   K  + ++
Sbjct: 42  MKLAGPVKQLQMDLRKLMLPYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLS 101

Query: 294 PDVAREPQSPT 326
             VAR PQ PT
Sbjct: 102 LRVARTPQGPT 112


>At5g61770.2 68418.m07751 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 346

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +3

Query: 114 LKCANSDKIIKSLLFGSRLYFTEITMPRLENPPTEDFRRVLREKALSHSLFYLKLGAGMT 293
           +K A   K ++  L    L +T +++   +     DF  V     ++H L   K  + ++
Sbjct: 42  MKLAGPVKQLQMDLRKLMLPYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLS 101

Query: 294 PDVAREPQSPT 326
             VAR PQ PT
Sbjct: 102 LRVARTPQGPT 112


>At5g61770.1 68418.m07750 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 345

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +3

Query: 114 LKCANSDKIIKSLLFGSRLYFTEITMPRLENPPTEDFRRVLREKALSHSLFYLKLGAGMT 293
           +K A   K ++  L    L +T +++   +     DF  V     ++H L   K  + ++
Sbjct: 42  MKLAGPVKQLQMDLRKLMLPYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLS 101

Query: 294 PDVAREPQSPT 326
             VAR PQ PT
Sbjct: 102 LRVARTPQGPT 112


>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
           family protein contains Pfam domains PF00567: Tudor
           domain and PF00565: Staphylococcal nuclease homologue
          Length = 985

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 385 RWKRVVGGARATALPLGLRAVGDCGSRATSGVMPAPSFK 269
           RW +V G A A+   L   AVGD G+    G++ A   K
Sbjct: 150 RWSKVPGAAEASIRNLPPSAVGDSGNFDAMGLLAASKGK 188


>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 766

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 100 YMCSLCTVTTHIHCSF-AKNYAK 35
           Y C+ C +T H+HC F + +Y K
Sbjct: 682 YTCNECCITIHLHCLFGSSSYMK 704


>At3g07195.1 68416.m00858 proline-rich family protein
          Length = 225

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 294 PDVAREPQSPTARRPSGSAVARAPPTTRFQRHAQPRVSEL 413
           P  AR  Q P A +P      RAPP T   R   P   +L
Sbjct: 54  PQPARRIQKPEAPKPVKQDTPRAPPPTEKNRVKAPPADQL 93


>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
           hypothetical protein GI:4204272 from [Arabidopsis
           thaliana] contains weak PHD zinc finger motifs contains
           weak PHD zinc finger motifs DC1 domain, a divergent
           protein kinase C domain of unknown function.
          Length = 684

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 100 YMCSLCTVTTHIHCSFAKN 44
           Y C  CT+T H++C   K+
Sbjct: 598 YTCDFCTITLHVNCLLGKD 616


>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 612

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 100 YMCSLCTVTTHIHCSFAKN 44
           Y C+ C +T H+HC F  +
Sbjct: 509 YTCNKCCITIHLHCIFGSS 527


>At1g34480.1 68414.m04285 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 602

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 100 YMCSLCTVTTHIHCSFAK 47
           YMCS C +T HI C   K
Sbjct: 511 YMCSECDITLHIQCLLGK 528


>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 695

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 106 LRYMCSLCTVTTHIHCSFAK 47
           LRY C++C  T HI C   K
Sbjct: 600 LRYRCNVCCTTLHIDCLHGK 619


>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 694

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 100 YMCSLCTVTTHIHCSFAKN-YAKYH 29
           Y C  C++T H++C   K+ Y K H
Sbjct: 603 YTCEFCSITLHVNCLQGKDMYMKPH 627


>At4g39680.1 68417.m05614 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 633

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 273 KLGAGMTPDVAREPQSPTARRPSGSAVARAPPTTRFQRHAQPRVSELLRRFEPAPM 440
           KL A + P    +PQ+ T  RP  +A+   PP  +      P V E L    P P+
Sbjct: 538 KLEAPLPPQPQHQPQAQTLSRPPPTALPPPPPLAK-----PPHVVERLPLPPPPPI 588


>At3g21210.1 68416.m02680 universal stress protein (USP) family
           protein / DC1 domain-containing protein contains Pfam
           profiles PF03107: DC1 domain, PF00582: universal stress
           protein family
          Length = 686

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 100 YMCSLCTVTTHIHCSFAK 47
           YMC+ C VT H+ C   K
Sbjct: 626 YMCNDCNVTLHVECLLGK 643


>At3g07540.1 68416.m00900 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 841

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 369 SAARAPPHCRSASALWATAAREQHPASCRRPASNKTSYGLMPFHVTLDGSPPLGGFP--G 196
           SAA +PP   S +  W+T      P+S  R   N   YG     +    +  L GFP   
Sbjct: 266 SAAMSPP-MNSTAPHWSTNQNTHSPSSPERTVRNNKRYGGQSLRMFSLWNQNL-GFPRIS 323

Query: 195 AASLSP 178
           +AS SP
Sbjct: 324 SASTSP 329


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -2

Query: 109 YLRYMCSLCTVTTHIHCSFAKN-YAKYH 29
           Y  Y C  C +T H+ C   K+ Y K H
Sbjct: 570 YWFYTCDSCKITLHVTCLLGKDIYVKPH 597


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,638,704
Number of Sequences: 28952
Number of extensions: 239341
Number of successful extensions: 897
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)