Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10l04
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic... 70 1e-12
At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden... 46 2e-05
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC... 44 1e-04
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar... 36 0.032
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar... 36 0.032
At3g13620.1 68416.m01714 amino acid permease family protein weak... 29 3.6
At3g18900.1 68416.m02400 expressed protein contains Pfam profile... 28 6.4
>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
to acyl-CoA-binding protein (ACBP) [Arabidopsis
thaliana] SWISS-PROT:P57752
Length = 92
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = +1
Query: 70 MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 249
M L+E+F++ A V L LP++ LL LY +KQA G D +RPG+ +K +AK+DA
Sbjct: 1 MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDA 59
Query: 250 WHKLAGTSKEDAQKAYIEIVEGLI 321
W + G S E+A YI V+ L+
Sbjct: 60 WKAVEGKSSEEAMNDYITKVKQLL 83
>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
identical to acyl-CoA binding protein 2 [Arabidopsis
thaliana] gi|12039034|gb|AAG46057
Length = 354
Score = 46.0 bits (104), Expect = 2e-05
Identities = 29/77 (37%), Positives = 40/77 (51%)
Frame = +1
Query: 88 FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 267
F AA + + +P+D Q LY +K AT G A +P L + +AK+ AW KL
Sbjct: 114 FVTTAAADRLSQKVPSDVQQ-QLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGA 171
Query: 268 TSKEDAQKAYIEIVEGL 318
E+A + YIEIV L
Sbjct: 172 MPPEEAMEKYIEIVTQL 188
>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
putative similar to acyl-CoA binding protein 2
[Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 338
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = +1
Query: 88 FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 267
F AAA+ + + + + QL LY +K AT G A +P L + +AK+ AW KL
Sbjct: 104 FVAAAASDRLSQKVSNELQL-QLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGA 161
Query: 268 TSKEDAQKAYIEIVEGL 318
E+A + YI++V L
Sbjct: 162 MPPEEAMEKYIDLVTQL 178
>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 669
Score = 35.5 bits (78), Expect = 0.032
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +1
Query: 91 DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 270
D +A NV + P D LL LYA ++QATVG + +P ++K+ +W L
Sbjct: 29 DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84
Query: 271 SKEDAQKAYIEIVE 312
+A + +++I+E
Sbjct: 85 PSIEAMRLFVKILE 98
>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 668
Score = 35.5 bits (78), Expect = 0.032
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +1
Query: 91 DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 270
D +A NV + P D LL LYA ++QATVG + +P ++K+ +W L
Sbjct: 29 DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84
Query: 271 SKEDAQKAYIEIVE 312
+A + +++I+E
Sbjct: 85 PSIEAMRLFVKILE 98
>At3g13620.1 68416.m01714 amino acid permease family protein weak
similarity to SP|Q9WTR6 Cystine/glutamate transporter
(Amino acid transport system xc-) {Mus musculus};
contains Pfam profile PF00324: Amino acid permease
Length = 478
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 161 AYKLRSWASVGRAFRFFTLAAAWSNFSWRDILI 63
AY+L A +G +FF + + W N W ILI
Sbjct: 314 AYQLEGMAELGFLPKFFGVRSKWFNTPWVGILI 346
>At3g18900.1 68416.m02400 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547; contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 815
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 654 TERPSTCILLKHDFEKDASYFIAVQYYALAPWKYRS 547
TE P T LLK DF + S + + Y++L ++ +
Sbjct: 649 TETPRTISLLKFDFSIEKSVLVPLPYHSLQSRRFEA 684
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,553,302
Number of Sequences: 28952
Number of extensions: 263153
Number of successful extensions: 665
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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